Last updated on 2025-04-28 06:49:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 10.01 | 85.20 | 95.21 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 6.72 | 59.43 | 66.15 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 143.20 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 160.14 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.0 | 12.00 | 100.00 | 112.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.0 | 8.39 | 79.09 | 87.48 | ERROR | |
| r-release-linux-x86_64 | 1.0.0 | 9.66 | 83.51 | 93.17 | ERROR | |
| r-release-macos-arm64 | 1.0.0 | 41.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 166.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 13.00 | 101.00 | 114.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.0 | 39.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 66.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 17.00 | 116.00 | 133.00 | ERROR |
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [13s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(glossa)
Loading required package: bs4Dash
Attaching package: 'bs4Dash'
The following object is masked from 'package:graphics':
box
Loading required package: shiny
Attaching package: 'shiny'
The following objects are masked from 'package:bs4Dash':
actionButton, column, insertTab, navbarMenu, tabsetPanel
> library(terra)
terra 1.8.42
Attaching package: 'terra'
The following objects are masked from 'package:testthat':
compare, describe
> library(sf)
Linking to GEOS 3.13.1, GDAL 3.10.3, PROJ 9.6.0; sf_use_s2() is TRUE
>
> test_check("glossa")
Spherical geometry (s2) switched off
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test-glossa_analysis.R:5:3', 'test-process_layers.R:5:3',
'test-process_polygon.R:5:3', 'test-read_validate_files.R:5:3',
'test-read_validate_files.R:18:3', 'test-read_validate_files.R:30:3',
'test-read_validate_files.R:42:3', 'test-read_validate_files.R:54:3',
'test-read_validate_files.R:78:3', 'test-read_validate_files.R:104:3',
'test-utils.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-process_presence_absence.R:31:3'): clean_coordinates removes close points based on decimal_digits ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(toy_data, study_area, decimal_digits = 0) at test-process_presence_absence.R:31:3
2. └─GeoThinneR::thin_points(...)
── Error ('test-process_presence_absence.R:62:3'): clean_coordinates is reproducible with seed ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(...) at test-process_presence_absence.R:62:3
2. └─GeoThinneR::thin_points(...)
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(glossa)
Loading required package: bs4Dash
Attaching package: 'bs4Dash'
The following object is masked from 'package:graphics':
box
Loading required package: shiny
Attaching package: 'shiny'
The following objects are masked from 'package:bs4Dash':
actionButton, column, insertTab, navbarMenu, tabsetPanel
> library(terra)
terra 1.8.42
Attaching package: 'terra'
The following objects are masked from 'package:testthat':
compare, describe
> library(sf)
Linking to GEOS 3.13.1, GDAL 3.10.3, PROJ 9.6.0; sf_use_s2() is TRUE
>
> test_check("glossa")
Spherical geometry (s2) switched off
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test-glossa_analysis.R:5:3', 'test-process_layers.R:5:3',
'test-process_polygon.R:5:3', 'test-read_validate_files.R:5:3',
'test-read_validate_files.R:18:3', 'test-read_validate_files.R:30:3',
'test-read_validate_files.R:42:3', 'test-read_validate_files.R:54:3',
'test-read_validate_files.R:78:3', 'test-read_validate_files.R:104:3',
'test-utils.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-process_presence_absence.R:31:3'): clean_coordinates removes close points based on decimal_digits ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(toy_data, study_area, decimal_digits = 0) at test-process_presence_absence.R:31:3
2. └─GeoThinneR::thin_points(...)
── Error ('test-process_presence_absence.R:62:3'): clean_coordinates is reproducible with seed ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(...) at test-process_presence_absence.R:62:3
2. └─GeoThinneR::thin_points(...)
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [20s/20s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(glossa)
Loading required package: bs4Dash
Attaching package: 'bs4Dash'
The following object is masked from 'package:graphics':
box
Loading required package: shiny
Attaching package: 'shiny'
The following objects are masked from 'package:bs4Dash':
actionButton, column, insertTab, navbarMenu, tabsetPanel
> library(terra)
terra 1.8.42
Attaching package: 'terra'
The following objects are masked from 'package:testthat':
compare, describe
> library(sf)
Linking to GEOS 3.12.2, GDAL 3.5.3, PROJ 9.3.1; sf_use_s2() is TRUE
>
> test_check("glossa")
Spherical geometry (s2) switched off
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test-glossa_analysis.R:5:3', 'test-process_layers.R:5:3',
'test-process_polygon.R:5:3', 'test-read_validate_files.R:5:3',
'test-read_validate_files.R:18:3', 'test-read_validate_files.R:30:3',
'test-read_validate_files.R:42:3', 'test-read_validate_files.R:54:3',
'test-read_validate_files.R:78:3', 'test-read_validate_files.R:104:3',
'test-utils.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-process_presence_absence.R:31:3'): clean_coordinates removes close points based on decimal_digits ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(toy_data, study_area, decimal_digits = 0) at test-process_presence_absence.R:31:3
2. └─GeoThinneR::thin_points(...)
── Error ('test-process_presence_absence.R:62:3'): clean_coordinates is reproducible with seed ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(...) at test-process_presence_absence.R:62:3
2. └─GeoThinneR::thin_points(...)
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/66s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(glossa)
Loading required package: bs4Dash
Attaching package: 'bs4Dash'
The following object is masked from 'package:graphics':
box
Loading required package: shiny
Attaching package: 'shiny'
The following objects are masked from 'package:bs4Dash':
actionButton, column, insertTab, navbarMenu, tabsetPanel
> library(terra)
terra 1.8.42
Attaching package: 'terra'
The following objects are masked from 'package:testthat':
compare, describe
> library(sf)
Linking to GEOS 3.12.2, GDAL 3.8.5, PROJ 9.3.1; sf_use_s2() is TRUE
>
> test_check("glossa")
Spherical geometry (s2) switched off
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test-glossa_analysis.R:5:3', 'test-process_layers.R:5:3',
'test-process_polygon.R:5:3', 'test-read_validate_files.R:5:3',
'test-read_validate_files.R:18:3', 'test-read_validate_files.R:30:3',
'test-read_validate_files.R:42:3', 'test-read_validate_files.R:54:3',
'test-read_validate_files.R:78:3', 'test-read_validate_files.R:104:3',
'test-utils.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-process_presence_absence.R:31:3'): clean_coordinates removes close points based on decimal_digits ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(toy_data, study_area, decimal_digits = 0) at test-process_presence_absence.R:31:3
2. └─GeoThinneR::thin_points(...)
── Error ('test-process_presence_absence.R:62:3'): clean_coordinates is reproducible with seed ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(...) at test-process_presence_absence.R:62:3
2. └─GeoThinneR::thin_points(...)
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running 'testthat.R' [10s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(glossa)
Loading required package: bs4Dash
Attaching package: 'bs4Dash'
The following object is masked from 'package:graphics':
box
Loading required package: shiny
Attaching package: 'shiny'
The following objects are masked from 'package:bs4Dash':
actionButton, column, insertTab, navbarMenu, tabsetPanel
> library(terra)
terra 1.8.42
Attaching package: 'terra'
The following objects are masked from 'package:testthat':
compare, describe
> library(sf)
Linking to GEOS 3.13.1, GDAL 3.10.2, PROJ 9.5.1; sf_use_s2() is TRUE
>
> test_check("glossa")
Spherical geometry (s2) switched off
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test-glossa_analysis.R:5:3', 'test-process_layers.R:5:3',
'test-process_polygon.R:5:3', 'test-read_validate_files.R:5:3',
'test-read_validate_files.R:18:3', 'test-read_validate_files.R:30:3',
'test-read_validate_files.R:42:3', 'test-read_validate_files.R:54:3',
'test-read_validate_files.R:78:3', 'test-read_validate_files.R:104:3',
'test-utils.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-process_presence_absence.R:31:3'): clean_coordinates removes close points based on decimal_digits ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(toy_data, study_area, decimal_digits = 0) at test-process_presence_absence.R:31:3
2. └─GeoThinneR::thin_points(...)
── Error ('test-process_presence_absence.R:62:3'): clean_coordinates is reproducible with seed ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(...) at test-process_presence_absence.R:62:3
2. └─GeoThinneR::thin_points(...)
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
Error: Test failures
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(glossa)
Loading required package: bs4Dash
Attaching package: 'bs4Dash'
The following object is masked from 'package:graphics':
box
Loading required package: shiny
Attaching package: 'shiny'
The following objects are masked from 'package:bs4Dash':
actionButton, column, insertTab, navbarMenu, tabsetPanel
> library(terra)
terra 1.8.42
Attaching package: 'terra'
The following objects are masked from 'package:testthat':
compare, describe
> library(sf)
Linking to GEOS 3.13.1, GDAL 3.10.3, PROJ 9.6.0; sf_use_s2() is TRUE
>
> test_check("glossa")
Spherical geometry (s2) switched off
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test-glossa_analysis.R:5:3', 'test-process_layers.R:5:3',
'test-process_polygon.R:5:3', 'test-read_validate_files.R:5:3',
'test-read_validate_files.R:18:3', 'test-read_validate_files.R:30:3',
'test-read_validate_files.R:42:3', 'test-read_validate_files.R:54:3',
'test-read_validate_files.R:78:3', 'test-read_validate_files.R:104:3',
'test-utils.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-process_presence_absence.R:31:3'): clean_coordinates removes close points based on decimal_digits ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(toy_data, study_area, decimal_digits = 0) at test-process_presence_absence.R:31:3
2. └─GeoThinneR::thin_points(...)
── Error ('test-process_presence_absence.R:62:3'): clean_coordinates is reproducible with seed ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(...) at test-process_presence_absence.R:62:3
2. └─GeoThinneR::thin_points(...)
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(glossa)
Loading required package: bs4Dash
Attaching package: 'bs4Dash'
The following object is masked from 'package:graphics':
box
Loading required package: shiny
Attaching package: 'shiny'
The following objects are masked from 'package:bs4Dash':
actionButton, column, insertTab, navbarMenu, tabsetPanel
> library(terra)
terra 1.8.42
Attaching package: 'terra'
The following objects are masked from 'package:testthat':
compare, describe
> library(sf)
Linking to GEOS 3.13.1, GDAL 3.10.3, PROJ 9.6.0; sf_use_s2() is TRUE
>
> test_check("glossa")
Spherical geometry (s2) switched off
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test-glossa_analysis.R:5:3', 'test-process_layers.R:5:3',
'test-process_polygon.R:5:3', 'test-read_validate_files.R:5:3',
'test-read_validate_files.R:18:3', 'test-read_validate_files.R:30:3',
'test-read_validate_files.R:42:3', 'test-read_validate_files.R:54:3',
'test-read_validate_files.R:78:3', 'test-read_validate_files.R:104:3',
'test-utils.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-process_presence_absence.R:31:3'): clean_coordinates removes close points based on decimal_digits ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(toy_data, study_area, decimal_digits = 0) at test-process_presence_absence.R:31:3
2. └─GeoThinneR::thin_points(...)
── Error ('test-process_presence_absence.R:62:3'): clean_coordinates is reproducible with seed ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(...) at test-process_presence_absence.R:62:3
2. └─GeoThinneR::thin_points(...)
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running 'testthat.R' [13s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(glossa)
Loading required package: bs4Dash
Attaching package: 'bs4Dash'
The following object is masked from 'package:graphics':
box
Loading required package: shiny
Attaching package: 'shiny'
The following objects are masked from 'package:bs4Dash':
actionButton, column, insertTab, navbarMenu, tabsetPanel
> library(terra)
terra 1.8.42
Attaching package: 'terra'
The following objects are masked from 'package:testthat':
compare, describe
> library(sf)
Linking to GEOS 3.13.0, GDAL 3.10.1, PROJ 9.5.1; sf_use_s2() is TRUE
>
> test_check("glossa")
Spherical geometry (s2) switched off
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test-glossa_analysis.R:5:3', 'test-process_layers.R:5:3',
'test-process_polygon.R:5:3', 'test-read_validate_files.R:5:3',
'test-read_validate_files.R:18:3', 'test-read_validate_files.R:30:3',
'test-read_validate_files.R:42:3', 'test-read_validate_files.R:54:3',
'test-read_validate_files.R:78:3', 'test-read_validate_files.R:104:3',
'test-utils.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-process_presence_absence.R:31:3'): clean_coordinates removes close points based on decimal_digits ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(toy_data, study_area, decimal_digits = 0) at test-process_presence_absence.R:31:3
2. └─GeoThinneR::thin_points(...)
── Error ('test-process_presence_absence.R:62:3'): clean_coordinates is reproducible with seed ──
Error in `GeoThinneR::thin_points(df, long_col = coords[1], lat_col = coords[2],
group_col = group_col, method = "precision", trials = 1,
all_trials = FALSE, seed = seed, precision = decimal_digits)`: Specified longitude or latitude columns do not exist in the data.
Backtrace:
▆
1. └─glossa::clean_coordinates(...) at test-process_presence_absence.R:62:3
2. └─GeoThinneR::thin_points(...)
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 43 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64