Last updated on 2025-09-12 22:51:23 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.0 | 11.42 | 94.60 | 106.02 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.0 | 7.68 | 66.65 | 74.33 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.0 | 164.14 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.0 | 167.52 | ERROR | |||
| r-devel-windows-x86_64 | 2.0.0 | 12.00 | 134.00 | 146.00 | OK | |
| r-patched-linux-x86_64 | 2.0.0 | 10.71 | 117.39 | 128.10 | OK | |
| r-release-linux-x86_64 | 2.0.0 | 10.51 | 117.76 | 128.27 | OK | |
| r-release-macos-arm64 | 2.0.0 | 65.00 | OK | |||
| r-release-macos-x86_64 | 2.0.0 | 140.00 | OK | |||
| r-release-windows-x86_64 | 2.0.0 | 12.00 | 135.00 | 147.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.0 | 63.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.0 | 102.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.0 | 17.00 | 167.00 | 184.00 | OK |
Version: 2.0.0
Check: examples
Result: ERROR
Running examples in ‘graphPAF-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.SAF_summary
> ### Title: Produce plots of sequential and average PAF
> ### Aliases: plot.SAF_summary
>
> ### ** Examples
>
> library(splines)
> library(survival)
> library(parallel)
> options(boot.parallel="snow")
> options(boot.ncpus=2)
> # Simulated data on occupational and environmental exposure to
> # chronic cough from Eide, 1995
> # First specify the causal graph, in terms of the parents of each node. Then put into a list
> parent_urban.rural <- c()
> parent_smoking.category <- c("urban.rural")
> parent_occupational.exposure <- c("urban.rural")
> parent_y <- c("urban.rural","smoking.category","occupational.exposure")
> parent_list <- list(parent_urban.rural, parent_smoking.category,
+ parent_occupational.exposure, parent_y)
> # also specify nodes of graph, in order from root to leaves
> node_vec <- c("urban.rural","smoking.category","occupational.exposure", "y")
> model_list=automatic_fit(Hordaland_data,
+ parent_list=parent_list, node_vec=node_vec, prev=.09)
Warning in eval(family$initialize) :
non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
non-integer #successes in a binomial glm!
> out <- average_paf(data=model_list[[length(model_list)]]$data,
+ model_list=model_list,
+ parent_list=parent_list, node_vec=node_vec, prev=.09, nperm=10,
+ riskfactor_vec = c("urban.rural","occupational.exposure"),ci=FALSE)
> plot(out)
Warning in fortify(data, ...) : Arguments in `...` must be used.
✖ Problematic argument:
• size = point.size
ℹ Did you misspell an argument name?
Error: Can't find method for generic `+(e1, e2)`:
- e1: <ggplot2::element_text>
- e2: <theme>
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot.PAF_q 4.413 0.182 5.791
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0.0
Check: examples
Result: ERROR
Running examples in ‘graphPAF-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.SAF_summary
> ### Title: Produce plots of sequential and average PAF
> ### Aliases: plot.SAF_summary
>
> ### ** Examples
>
> library(splines)
> library(survival)
> library(parallel)
> options(boot.parallel="snow")
> options(boot.ncpus=2)
> # Simulated data on occupational and environmental exposure to
> # chronic cough from Eide, 1995
> # First specify the causal graph, in terms of the parents of each node. Then put into a list
> parent_urban.rural <- c()
> parent_smoking.category <- c("urban.rural")
> parent_occupational.exposure <- c("urban.rural")
> parent_y <- c("urban.rural","smoking.category","occupational.exposure")
> parent_list <- list(parent_urban.rural, parent_smoking.category,
+ parent_occupational.exposure, parent_y)
> # also specify nodes of graph, in order from root to leaves
> node_vec <- c("urban.rural","smoking.category","occupational.exposure", "y")
> model_list=automatic_fit(Hordaland_data,
+ parent_list=parent_list, node_vec=node_vec, prev=.09)
Warning in eval(family$initialize) :
non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
non-integer #successes in a binomial glm!
> out <- average_paf(data=model_list[[length(model_list)]]$data,
+ model_list=model_list,
+ parent_list=parent_list, node_vec=node_vec, prev=.09, nperm=10,
+ riskfactor_vec = c("urban.rural","occupational.exposure"),ci=FALSE)
> plot(out)
Warning in fortify(data, ...) : Arguments in `...` must be used.
✖ Problematic argument:
• size = point.size
ℹ Did you misspell an argument name?
Error: Can't find method for generic `+(e1, e2)`:
- e1: <ggplot2::element_text>
- e2: <theme>
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.0
Check: examples
Result: ERROR
Running examples in ‘graphPAF-Ex.R’ failed
The error most likely occurred in:
> ### Name: plot.SAF_summary
> ### Title: Produce plots of sequential and average PAF
> ### Aliases: plot.SAF_summary
>
> ### ** Examples
>
> library(splines)
> library(survival)
> library(parallel)
> options(boot.parallel="snow")
> options(boot.ncpus=2)
> # Simulated data on occupational and environmental exposure to
> # chronic cough from Eide, 1995
> # First specify the causal graph, in terms of the parents of each node. Then put into a list
> parent_urban.rural <- c()
> parent_smoking.category <- c("urban.rural")
> parent_occupational.exposure <- c("urban.rural")
> parent_y <- c("urban.rural","smoking.category","occupational.exposure")
> parent_list <- list(parent_urban.rural, parent_smoking.category,
+ parent_occupational.exposure, parent_y)
> # also specify nodes of graph, in order from root to leaves
> node_vec <- c("urban.rural","smoking.category","occupational.exposure", "y")
> model_list=automatic_fit(Hordaland_data,
+ parent_list=parent_list, node_vec=node_vec, prev=.09)
Warning in eval(family$initialize) :
non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
non-integer #successes in a binomial glm!
> out <- average_paf(data=model_list[[length(model_list)]]$data,
+ model_list=model_list,
+ parent_list=parent_list, node_vec=node_vec, prev=.09, nperm=10,
+ riskfactor_vec = c("urban.rural","occupational.exposure"),ci=FALSE)
> plot(out)
Warning in fortify(data, ...) : Arguments in `...` must be used.
✖ Problematic argument:
• size = point.size
ℹ Did you misspell an argument name?
Error: Can't find method for generic `+(e1, e2)`:
- e1: <ggplot2::element_text>
- e2: <theme>
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc