Last updated on 2025-12-19 02:49:53 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 4.2.2 | 144.89 | 539.10 | 683.99 | OK | |
| r-devel-linux-x86_64-debian-gcc | 4.2.2 | 93.64 | 329.39 | 423.03 | OK | |
| r-devel-linux-x86_64-fedora-clang | 4.2.2 | 300.00 | 885.92 | 1185.92 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 4.2.2 | 300.00 | OK | |||
| r-devel-windows-x86_64 | 4.2.2 | 153.00 | 493.00 | 646.00 | OK | |
| r-patched-linux-x86_64 | 4.2.2 | 143.95 | 514.45 | 658.40 | OK | |
| r-release-linux-x86_64 | 4.2.2 | 141.69 | 510.49 | 652.18 | OK | |
| r-release-macos-arm64 | 4.2.2 | OK | ||||
| r-release-macos-x86_64 | 4.2.2 | 92.00 | 524.00 | 616.00 | OK | |
| r-release-windows-x86_64 | 4.2.2 | 157.00 | 496.00 | 653.00 | OK | |
| r-oldrel-macos-arm64 | 4.2.2 | NOTE | ||||
| r-oldrel-macos-x86_64 | 4.2.2 | 91.00 | 597.00 | 688.00 | NOTE | |
| r-oldrel-windows-x86_64 | 4.2.2 | 192.00 | 633.00 | 825.00 | ERROR |
Version: 4.2.2
Check: compiled code
Result: NOTE
File ‘lidR/libs/lidR.so’:
Found non-API call to R: ‘ATTRIB’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 4.2.2
Check: examples
Result: ERROR
Running examples in ‘lidR-Ex.R’ failed
The error most likely occurred in:
> ### Name: aggregate
> ### Title: Metric derivation at different levels of regularization
> ### Aliases: aggregate cloud_metrics crown_metrics hexagon_metrics
> ### pixel_metrics plot_metrics polygon_metrics template_metrics
> ### voxel_metrics
>
> ### ** Examples
>
> LASfile <- system.file("extdata", "Megaplot.laz", package="lidR")
> las <- readLAS(LASfile, filter = "-keep_random_fraction 0.5")
> col <- sf::sf.colors(15)
> fun1 <- ~list(maxz = max(Z))
> fun2 <- ~list(q85 = quantile(Z, probs = 0.85))
>
> set_lidr_threads(1) ; data.table::setDTthreads(1) # for cran only
>
> # ================
> # CLOUD METRICS
> # ================
>
> cloud_metrics(las, .stdmetrics_z)
$zmax
[1] 29.11
$zmean
[1] 13.27629
$zsd
[1] 7.456352
$zskew
[1] -0.4764641
$zkurt
[1] 2.086569
$zentropy
[1] 0.9034754
$pzabovezmean
[1] 57.36855
$pzabove2
[1] 85.71007
$zq5
[1] 0
$zq10
[1] 0.09
$zq15
[1] 2.86
$zq20
[1] 5.79
$zq25
[1] 7.81
$zq30
[1] 9.64
$zq35
[1] 11.21
$zq40
[1] 12.63
$zq45
[1] 13.83
$zq50
[1] 14.91
$zq55
[1] 16
$zq60
[1] 16.89
$zq65
[1] 17.71
$zq70
[1] 18.53
$zq75
[1] 19.3
$zq80
[1] 20.09
$zq85
[1] 20.88
$zq90
[1] 21.79
$zq95
[1] 23.05
$zpcum1
[1] 6.52697
$zpcum2
[1] 12.03731
$zpcum3
[1] 20.22982
$zpcum4
[1] 30.04461
$zpcum5
[1] 43.09585
$zpcum6
[1] 59.87833
$zpcum7
[1] 80.14871
$zpcum8
[1] 95.21968
$zpcum9
[1] 99.55928
>
> # ================
> # PIXEL METRICS
> # ================
>
> m <- pixel_metrics(las, fun1, 20)
> #plot(m, col = col)
>
> # ================
> # PLOT METRICS
> # ================
>
> shpfile <- system.file("extdata", "efi_plot.shp", package="lidR")
> inventory <- sf::st_read(shpfile, quiet = TRUE)
> inventory # contains an ID and a Value Of Interest (VOI) per plot
Simple feature collection with 5 features and 2 fields
Geometry type: POINT
Dimension: XY
Bounding box: xmin: 684838.9 ymin: 5017796 xmax: 684976.6 ymax: 5017958
Projected CRS: NAD83 / UTM zone 17N
IDPEP VOI geometry
1 PEPQ1 14.157140 POINT (684976.6 5017821)
2 PEPQ2 12.720584 POINT (684923.9 5017958)
3 PEPQ3 11.396656 POINT (684838.9 5017942)
4 PEPQ4 11.597471 POINT (684855 5017891)
5 PEPQ5 8.263425 POINT (684944 5017796)
>
> m <- plot_metrics(las, fun2, inventory, radius = 11.28)
> #plot(header(las))
> #plot(m["q85"], pch = 19, cex = 3, add = TRUE)
>
>
> # ================
> # VOXEL METRICS
> # ================
>
> m <- voxel_metrics(las, length(Z), 8)
Error in `[.data.table`(by, , `:=`(GRP, .GRP), by = c("Xgrid", "Ygrid", :
attempt access index 3/3 in VECTOR_ELT
Calls: voxel_metrics -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 4.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [322s/570s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(lidR)
> test_check("lidR")
Tests using raster: terra
Tests using future: TRUE
Tests using OpenMP thread: 1
Tests using rlas: 1.8.2
OGR: Unsupported geometry type
OGR: Unsupported geometry type
Chunk 1 of 1 (100%): state ✓
Saving _problems/test-metrics_voxels-5.R
Saving _problems/test-metrics_voxels-14.R
Saving _problems/test-metrics_voxels-23.R
[ FAIL 3 | WARN 0 | SKIP 46 | PASS 1289 ]
══ Skipped tests (46) ══════════════════════════════════════════════════════════
• On CRAN (41): 'test-apply_automerge.R:99:3', 'test-apply_automerge.R:163:3',
'test-apply_automerge.R:183:3', 'test-apply_automerge.R:196:3',
'test-apply_automerge.R:217:3', 'test-apply_automerge.R:229:3',
'test-apply_automerge.R:263:3', 'test-apply_automerge.R:274:3',
'test-apply_automerge.R:320:3', 'test-apply_automerge.R:335:3',
'test-apply_autoread.R:3:3', 'test-apply_generic.R:22:3',
'test-apply_generic.R:108:3', 'test-catalog_laxindex.R:4:3',
'test-classify_ground.R:62:3', 'test-classify_poi.R:21:3',
'test-concaveman.R:15:3', 'test-concaveman.R:64:3',
'test-fullwaveform.R:2:3', 'test-generic_local_maximum.R:2:3',
'test-metrics_crowns.R:31:3', 'test-metrics_crowns.R:112:3',
'test-metrics_crowns.R:122:3', 'test-plot.R:7:3', 'test-plot.R:15:3',
'test-plot.R:49:3', 'test-plot.R:73:3', 'test-plot.R:79:3',
'test-plot.R:86:3', 'test-plot.R:93:3', 'test-plot.R:100:3',
'test-plot.R:107:3', 'test-plot.R:118:3', 'test-projection.R:82:3',
'test-projection.R:107:3', 'test-rasterize_canopy.R:66:3',
'test-rasterize_terrain.R:145:3', 'test-segment_snags.R:27:2',
'test-segment_trees.R:73:3', 'test-track_sensor.R:45:3',
'test-voxelize_points.R:15:3'
• Point metrics disable (1): 'test-segment_shape.R:51:3'
• Point metrics disabled (1): 'test-metrics_points.R:9:1'
• empty test (3): , ,
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-metrics_voxels.R:5:3'): voxel_metrics returns a named data.frame ──
Error in ``[.data.table`(by, , `:=`(GRP, .GRP), by = c("Xgrid", "Ygrid", "Zgrid"))`: attempt access index 3/3 in VECTOR_ELT
Backtrace:
▆
1. └─lidR::voxel_metrics(las, list(Imean = mean(Intensity)), 5) at test-metrics_voxels.R:5:3
2. ├─by[, `:=`(GRP, .GRP), by = c("Xgrid", "Ygrid", "Zgrid")]
3. └─data.table:::`[.data.table`(...)
── Error ('test-metrics_voxels.R:14:3'): voxel_metrics works with all_voxels ───
Error in ``[.data.table`(by, , `:=`(GRP, .GRP), by = c("Xgrid", "Ygrid", "Zgrid"))`: attempt access index 3/3 in VECTOR_ELT
Backtrace:
▆
1. └─lidR::voxel_metrics(las, list(Imean = mean(Intensity)), 5, all_voxels = TRUE) at test-metrics_voxels.R:14:3
2. ├─by[, `:=`(GRP, .GRP), by = c("Xgrid", "Ygrid", "Zgrid")]
3. └─data.table:::`[.data.table`(...)
── Error ('test-metrics_voxels.R:23:3'): voxel_metrics accepts both an expression or a formula ──
Error in ``[.data.table`(by, , `:=`(GRP, .GRP), by = c("Xgrid", "Ygrid", "Zgrid"))`: attempt access index 3/3 in VECTOR_ELT
Backtrace:
▆
1. └─lidR::voxel_metrics(las, list(Imean = mean(Intensity)), 5) at test-metrics_voxels.R:23:3
2. ├─by[, `:=`(GRP, .GRP), by = c("Xgrid", "Ygrid", "Zgrid")]
3. └─data.table:::`[.data.table`(...)
[ FAIL 3 | WARN 0 | SKIP 46 | PASS 1289 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 4.2.2
Check: installed package size
Result: NOTE
installed size is 15.3Mb
sub-directories of 1Mb or more:
R 2.0Mb
doc 1.0Mb
extdata 1.2Mb
libs 10.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 4.2.2
Check: tests
Result: ERROR
Running 'testthat.R' [186s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(lidR)
> test_check("lidR")
Tests using raster: terra
Tests using future: TRUE
Tests using OpenMP thread: 1
Tests using rlas: 1.8.2
Saving _problems/test-apply_generic-85.R
Saving _problems/test-apply_independent-19.R
Saving _problems/test-apply_restart-21.R
OGR: Unsupported geometry type
OGR: Unsupported geometry type
Saving _problems/test-metrics_pixels-163.R
Saving _problems/test-metrics_pixels-225.R
Chunk 1 of 1 (100%): state ✓
Saving _problems/test-rasterize_canopy-103.R
Saving _problems/test-rasterize_canopy-121.R
Saving _problems/test-rasterize_density-16.R
Saving _problems/test-rasterize_terrain-129.R
[ FAIL 9 | WARN 17 | SKIP 46 | PASS 1269 ]
══ Skipped tests (46) ══════════════════════════════════════════════════════════
• On CRAN (41): 'test-apply_automerge.R:99:3', 'test-apply_automerge.R:163:3',
'test-apply_automerge.R:183:3', 'test-apply_automerge.R:196:3',
'test-apply_automerge.R:217:3', 'test-apply_automerge.R:229:3',
'test-apply_automerge.R:263:3', 'test-apply_automerge.R:274:3',
'test-apply_automerge.R:320:3', 'test-apply_automerge.R:335:3',
'test-apply_autoread.R:3:3', 'test-apply_generic.R:22:3',
'test-apply_generic.R:108:3', 'test-catalog_laxindex.R:4:3',
'test-classify_ground.R:62:3', 'test-classify_poi.R:21:3',
'test-concaveman.R:15:3', 'test-concaveman.R:64:3',
'test-fullwaveform.R:2:3', 'test-generic_local_maximum.R:2:3',
'test-metrics_crowns.R:31:3', 'test-metrics_crowns.R:112:3',
'test-metrics_crowns.R:122:3', 'test-plot.R:7:3', 'test-plot.R:15:3',
'test-plot.R:49:3', 'test-plot.R:73:3', 'test-plot.R:79:3',
'test-plot.R:86:3', 'test-plot.R:93:3', 'test-plot.R:100:3',
'test-plot.R:107:3', 'test-plot.R:118:3', 'test-projection.R:82:3',
'test-projection.R:107:3', 'test-rasterize_canopy.R:66:3',
'test-rasterize_terrain.R:145:3', 'test-segment_snags.R:27:2',
'test-segment_trees.R:73:3', 'test-track_sensor.R:45:3',
'test-voxelize_points.R:15:3'
• Point metrics disable (1): 'test-segment_shape.R:51:3'
• Point metrics disabled (1): 'test-metrics_points.R:9:1'
• empty test (3): , ,
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-apply_generic.R:85:3'): catalog_apply fixes chunk alignment even by file ──
Error: [rast] empty srs
Backtrace:
▆
1. └─lidR::catalog_sapply(ctg, test, res = res, align = sta) at test-apply_generic.R:85:3
2. └─lidR::catalog_apply(ctg, FUN, ..., .options = .options)
3. └─lidR::engine_apply(...)
4. ├─terra::rast(res)
5. └─terra::rast(res)
6. └─terra (local) .local(x, ...)
7. ├─terra::unwrap(x)
8. └─terra::unwrap(x)
9. └─terra (local) .local(x, ...)
10. ├─base::eval(parse(text = x@definition))
11. │ └─base::eval(parse(text = x@definition))
12. ├─terra::rast(...)
13. └─terra::rast(...)
14. └─terra (local) .local(x = x, ...)
15. └─terra:::new_rast(...)
16. └─terra:::messages(r, "rast")
17. └─terra:::error(f, x@pntr$getError())
── Error ('test-apply_independent.R:19:3'): opt_independent_files built several DTMs without error ──
Error: [rast] empty srs
Backtrace:
▆
1. ├─lidR::rasterize_terrain(ctg, 1, tin()) at test-apply_independent.R:19:3
2. └─lidR:::rasterize_terrain.LAScatalog(ctg, 1, tin())
3. └─lidR::catalog_apply(...)
4. └─lidR::engine_apply(...)
5. ├─terra::rast(res)
6. └─terra::rast(res)
7. └─terra (local) .local(x, ...)
8. ├─terra::unwrap(x)
9. └─terra::unwrap(x)
10. └─terra (local) .local(x, ...)
11. ├─base::eval(parse(text = x@definition))
12. │ └─base::eval(parse(text = x@definition))
13. ├─terra::rast(...)
14. └─terra::rast(...)
15. └─terra (local) .local(x = x, ...)
16. └─terra:::new_rast(...)
17. └─terra:::messages(r, "rast")
18. └─terra:::error(f, x@pntr$getError())
── Error ('test-apply_restart.R:21:3'): catalog engine returns a valid output ──
Error: [rast] empty srs
Backtrace:
▆
1. ├─lidR::pixel_metrics(ctg, ~mean(Z), 20) at test-apply_restart.R:21:3
2. └─lidR:::pixel_metrics.LAScatalog(ctg, ~mean(Z), 20)
3. └─lidR::catalog_apply(...)
4. └─lidR::engine_apply(...)
5. ├─terra::rast(res)
6. └─terra::rast(res)
7. └─terra (local) .local(x, ...)
8. ├─terra::unwrap(x)
9. └─terra::unwrap(x)
10. └─terra (local) .local(x, ...)
11. ├─base::eval(parse(text = x@definition))
12. │ └─base::eval(parse(text = x@definition))
13. ├─terra::rast(...)
14. └─terra::rast(...)
15. └─terra (local) .local(x = x, ...)
16. └─terra:::new_rast(...)
17. └─terra:::messages(r, "rast")
18. └─terra:::error(f, x@pntr$getError())
── Error ('test-metrics_pixels.R:163:3'): pixel_metric returns the same both with LAScatalog and LAS ──
Error: [rast] empty srs
Backtrace:
▆
1. ├─lidR::pixel_metrics(ctg, f1, 20) at test-metrics_pixels.R:163:3
2. └─lidR:::pixel_metrics.LAScatalog(ctg, f1, 20)
3. └─lidR::catalog_apply(...)
4. └─lidR::engine_apply(...)
5. ├─terra::rast(res)
6. └─terra::rast(res)
7. └─terra (local) .local(x, ...)
8. ├─terra::unwrap(x)
9. └─terra::unwrap(x)
10. └─terra (local) .local(x, ...)
11. ├─base::eval(parse(text = x@definition))
12. │ └─base::eval(parse(text = x@definition))
13. ├─terra::rast(...)
14. └─terra::rast(...)
15. └─terra (local) .local(x = x, ...)
16. └─terra:::new_rast(...)
17. └─terra:::messages(r, "rast")
18. └─terra:::error(f, x@pntr$getError())
── Failure ('test-metrics_pixels.R:225:3'): predefined metric set work both with a LAS and LAScatalog ──
`pixel_metrics(ctg, .stdmetrics_z)` threw an error.
Message: [rast] empty srs
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(pixel_metrics(ctg, .stdmetrics_z), NA) at test-metrics_pixels.R:225:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─lidR::pixel_metrics(ctg, .stdmetrics_z)
7. └─lidR:::pixel_metrics.LAScatalog(ctg, .stdmetrics_z)
8. └─lidR::catalog_apply(...)
9. └─lidR::engine_apply(...)
10. ├─terra::rast(res)
11. └─terra::rast(res)
12. └─terra (local) .local(x, ...)
13. ├─terra::unwrap(x)
14. └─terra::unwrap(x)
15. └─terra (local) .local(x, ...)
16. ├─base::eval(parse(text = x@definition))
17. │ └─base::eval(parse(text = x@definition))
18. ├─terra::rast(...)
19. └─terra::rast(...)
20. └─terra (local) .local(x = x, ...)
21. └─terra:::new_rast(...)
22. └─terra:::messages(r, "rast")
23. └─terra:::error(f, x@pntr$getError())
── Error ('test-rasterize_canopy.R:103:3'): rasterize_canopy tin works both with LAS and LAScatalog ──
Error: [rast] empty srs
Backtrace:
▆
1. ├─lidR::rasterize_canopy(ctg, 1, f) at test-rasterize_canopy.R:103:3
2. └─lidR:::rasterize_canopy.LAScatalog(ctg, 1, f)
3. └─lidR::catalog_apply(...)
4. └─lidR::engine_apply(...)
5. ├─terra::rast(res)
6. └─terra::rast(res)
7. └─terra (local) .local(x, ...)
8. ├─terra::unwrap(x)
9. └─terra::unwrap(x)
10. └─terra (local) .local(x, ...)
11. ├─base::eval(parse(text = x@definition))
12. │ └─base::eval(parse(text = x@definition))
13. ├─terra::rast(...)
14. └─terra::rast(...)
15. └─terra (local) .local(x = x, ...)
16. └─terra:::new_rast(...)
17. └─terra:::messages(r, "rast")
18. └─terra:::error(f, x@pntr$getError())
── Error ('test-rasterize_canopy.R:121:3'): rasterize_canopy pit-free works both with LAS and LAScatalog ──
Error: [rast] empty srs
Backtrace:
▆
1. ├─lidR::rasterize_canopy(ctg, 1, f) at test-rasterize_canopy.R:121:3
2. └─lidR:::rasterize_canopy.LAScatalog(ctg, 1, f)
3. └─lidR::catalog_apply(...)
4. └─lidR::engine_apply(...)
5. ├─terra::rast(res)
6. └─terra::rast(res)
7. └─terra (local) .local(x, ...)
8. ├─terra::unwrap(x)
9. └─terra::unwrap(x)
10. └─terra (local) .local(x, ...)
11. ├─base::eval(parse(text = x@definition))
12. │ └─base::eval(parse(text = x@definition))
13. ├─terra::rast(...)
14. └─terra::rast(...)
15. └─terra (local) .local(x = x, ...)
16. └─terra:::new_rast(...)
17. └─terra:::messages(r, "rast")
18. └─terra:::error(f, x@pntr$getError())
── Error ('test-rasterize_density.R:16:3'): rasterize_density returns the same both with LAScatalog and LAS ──
Error: [rast] empty srs
Backtrace:
▆
1. ├─lidR::rasterize_density(ctg) at test-rasterize_density.R:16:3
2. └─lidR:::rasterize_density.LAScatalog(ctg)
3. └─lidR::catalog_map(las, rasterize_density, res = res, ..., .options = options)
4. └─lidR::catalog_apply(ctg, FUN, ..., .options = .options)
5. └─lidR::engine_apply(...)
6. ├─terra::rast(res)
7. └─terra::rast(res)
8. └─terra (local) .local(x, ...)
9. ├─terra::unwrap(x)
10. └─terra::unwrap(x)
11. └─terra (local) .local(x, ...)
12. ├─base::eval(parse(text = x@definition))
13. │ └─base::eval(parse(text = x@definition))
14. ├─terra::rast(...)
15. └─terra::rast(...)
16. └─terra (local) .local(x = x, ...)
17. └─terra:::new_rast(...)
18. └─terra:::messages(r, "rast")
19. └─terra:::error(f, x@pntr$getError())
── Error ('test-rasterize_terrain.R:129:3'): rasterize_terrain returns the same both with LAScatalog and LAS ──
Error: [rast] empty srs
Backtrace:
▆
1. ├─lidR::rasterize_terrain(ctg, 1, tin()) at test-rasterize_terrain.R:129:3
2. └─lidR:::rasterize_terrain.LAScatalog(ctg, 1, tin())
3. └─lidR::catalog_apply(...)
4. └─lidR::engine_apply(...)
5. ├─terra::rast(res)
6. └─terra::rast(res)
7. └─terra (local) .local(x, ...)
8. ├─terra::unwrap(x)
9. └─terra::unwrap(x)
10. └─terra (local) .local(x, ...)
11. ├─base::eval(parse(text = x@definition))
12. │ └─base::eval(parse(text = x@definition))
13. ├─terra::rast(...)
14. └─terra::rast(...)
15. └─terra (local) .local(x = x, ...)
16. └─terra:::new_rast(...)
17. └─terra:::messages(r, "rast")
18. └─terra:::error(f, x@pntr$getError())
[ FAIL 9 | WARN 17 | SKIP 46 | PASS 1269 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64