Last updated on 2026-08-04 14:52:16 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.9 | 35.01 | 201.69 | 236.70 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.3.9 | 25.75 | 138.04 | 163.79 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.3.9 | 57.00 | 314.68 | 371.68 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.9 | 26.00 | 133.38 | 159.38 | NOTE | |
| r-devel-windows-x86_64 | 0.3.9 | 44.00 | 223.00 | 267.00 | NOTE | |
| r-patched-linux-x86_64 | 0.3.9 | 38.53 | 188.75 | 227.28 | OK | |
| r-release-linux-x86_64 | 0.3.9 | 34.95 | 189.29 | 224.24 | OK | |
| r-release-macos-arm64 | 0.3.9 | 8.00 | 47.00 | 55.00 | OK | |
| r-release-macos-x86_64 | 0.3.9 | 23.00 | 200.00 | 223.00 | OK | |
| r-release-windows-x86_64 | 0.3.9 | 46.00 | 256.00 | 302.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.9 | 7.00 | 47.00 | 54.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.9 | 26.00 | 218.00 | 244.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.9 | 56.00 | 324.00 | 380.00 | OK |
Version: 0.3.9
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
metacoder/tests/testthat/test--taxmap_parsers.R (.Names: 1)
'.Names' should be changed to 'names'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.3.9
Check: Rd contents
Result: NOTE
Rd files without \usage:
‘all_names.Rd’ ‘arrange_obs.Rd’ ‘arrange_taxa.Rd’ ‘branches.Rd’
‘classifications.Rd’ ‘filter_obs.Rd’ ‘filter_taxa.Rd’ ‘get_data.Rd’
‘get_data_frame.Rd’ ‘get_dataset.Rd’ ‘id_classifications.Rd’
‘internodes.Rd’ ‘is_branch.Rd’ ‘is_internode.Rd’ ‘is_leaf.Rd’
‘is_root.Rd’ ‘is_stem.Rd’ ‘leaves.Rd’ ‘leaves_apply.Rd’ ‘map_data.Rd’
‘map_data_.Rd’ ‘mutate_obs.Rd’ ‘n_leaves.Rd’ ‘n_leaves_1.Rd’
‘n_obs.Rd’ ‘n_obs_1.Rd’ ‘n_subtaxa.Rd’ ‘n_subtaxa_1.Rd’
‘n_supertaxa.Rd’ ‘n_supertaxa_1.Rd’ ‘obs.Rd’ ‘obs_apply.Rd’
‘print_tree.Rd’ ‘remove_redundant_names.Rd’ ‘replace_taxon_ids.Rd’
‘roots.Rd’ ‘sample_frac_obs.Rd’ ‘sample_frac_taxa.Rd’
‘sample_n_obs.Rd’ ‘sample_n_taxa.Rd’ ‘select_obs.Rd’ ‘stems.Rd’
‘subtaxa.Rd’ ‘subtaxa_apply.Rd’ ‘supertaxa.Rd’ ‘supertaxa_apply.Rd’
‘taxon_ids.Rd’ ‘taxon_indexes.Rd’ ‘taxon_names.Rd’ ‘taxon_ranks.Rd’
‘taxonomy_table.Rd’ ‘transmute_obs.Rd’
\arguments should not be documented without \usage.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.9
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp05kZyv’ ‘~/tmp/scratch/Rtmp0CGYYf’
‘~/tmp/scratch/Rtmp0MCYqW’ ‘~/tmp/scratch/Rtmp0Vp4kn’
‘~/tmp/scratch/Rtmp0c38WC’ ‘~/tmp/scratch/Rtmp0nh1Wf’
‘~/tmp/scratch/Rtmp1HzIgy’ ‘~/tmp/scratch/Rtmp1insz5’
‘~/tmp/scratch/Rtmp1zp0bC’ ‘~/tmp/scratch/Rtmp2BKwyf’
‘~/tmp/scratch/Rtmp2Fr0Eo’ ‘~/tmp/scratch/Rtmp2PSu5U’
‘~/tmp/scratch/Rtmp2Yx1fm’ ‘~/tmp/scratch/Rtmp3O32Nu’
‘~/tmp/scratch/Rtmp3XDEq5’ ‘~/tmp/scratch/Rtmp3ttCCJ’
‘~/tmp/scratch/Rtmp56LpO4’ ‘~/tmp/scratch/Rtmp6Cih3Q’
‘~/tmp/scratch/Rtmp7KTv5a’ ‘~/tmp/scratch/Rtmp7znnb5’
‘~/tmp/scratch/Rtmp8JaO6c’ ‘~/tmp/scratch/Rtmp9yVe0y’
‘~/tmp/scratch/RtmpBJQUSf’ ‘~/tmp/scratch/RtmpBONA5E’
‘~/tmp/scratch/RtmpBk8Ryr’ ‘~/tmp/scratch/RtmpC6Rbc9’
‘~/tmp/scratch/RtmpC8JMm3’ ‘~/tmp/scratch/RtmpCBcRmE’
‘~/tmp/scratch/RtmpCYI3Pp’ ‘~/tmp/scratch/RtmpCxj1ly’
‘~/tmp/scratch/RtmpDQzEGn’ ‘~/tmp/scratch/RtmpERh5s9’
‘~/tmp/scratch/RtmpExJxm3’ ‘~/tmp/scratch/RtmpFq537a’
‘~/tmp/scratch/RtmpFy57Q4’ ‘~/tmp/scratch/RtmpGJseeZ’
‘~/tmp/scratch/RtmpGzQkRN’ ‘~/tmp/scratch/RtmpHbtUk1’
‘~/tmp/scratch/RtmpHgOog1’ ‘~/tmp/scratch/RtmpI9D6MY’
‘~/tmp/scratch/RtmpJ1TIf2’ ‘~/tmp/scratch/RtmpKg0znX’
‘~/tmp/scratch/RtmpKwYviY’ ‘~/tmp/scratch/RtmpL7nbhq’
‘~/tmp/scratch/RtmpLPa0S8’ ‘~/tmp/scratch/RtmpLbJmJx’
‘~/tmp/scratch/RtmpMIrFaE’ ‘~/tmp/scratch/RtmpMJkpZf’
‘~/tmp/scratch/RtmpNoHPC7’ ‘~/tmp/scratch/RtmpNwGVzD’
‘~/tmp/scratch/RtmpO6umX2’ ‘~/tmp/scratch/RtmpO9yZ88’
‘~/tmp/scratch/RtmpOIPOg3’ ‘~/tmp/scratch/RtmpOPkKuW’
‘~/tmp/scratch/RtmpPAFS9J’ ‘~/tmp/scratch/RtmpPB6S0c’
‘~/tmp/scratch/RtmpPqDlFt’ ‘~/tmp/scratch/RtmpQLFOeK’
‘~/tmp/scratch/RtmpQPZCpV’ ‘~/tmp/scratch/RtmpQPmk4k’
‘~/tmp/scratch/RtmpQu1JE5’ ‘~/tmp/scratch/RtmpRATjKM’
‘~/tmp/scratch/RtmpRr8DCP’ ‘~/tmp/scratch/RtmpSjONJ2’
‘~/tmp/scratch/RtmpUBgP9H’ ‘~/tmp/scratch/RtmpV1bBa1’
‘~/tmp/scratch/RtmpVFZgQ1’ ‘~/tmp/scratch/RtmpVUQLcX’
‘~/tmp/scratch/RtmpVjwgc8’ ‘~/tmp/scratch/RtmpW593HA’
‘~/tmp/scratch/RtmpWGlLrg’ ‘~/tmp/scratch/RtmpWSWkqZ’
‘~/tmp/scratch/RtmpWV6oVv’ ‘~/tmp/scratch/RtmpXFm4cs’
‘~/tmp/scratch/RtmpXTu2aQ’ ‘~/tmp/scratch/RtmpYbNLSe’
‘~/tmp/scratch/RtmpZZXVPR’ ‘~/tmp/scratch/RtmpaELu5H’
‘~/tmp/scratch/Rtmpaoa6if’ ‘~/tmp/scratch/RtmpawjA8P’
‘~/tmp/scratch/RtmpbLLkLW’ ‘~/tmp/scratch/RtmpboTwVn’
‘~/tmp/scratch/RtmpbysqUA’ ‘~/tmp/scratch/RtmpcTuFKD’
‘~/tmp/scratch/Rtmpcujn7h’ ‘~/tmp/scratch/RtmpdFqori’
‘~/tmp/scratch/RtmpdJgvFN’ ‘~/tmp/scratch/RtmpdcheMi’
‘~/tmp/scratch/Rtmpde63tw’ ‘~/tmp/scratch/RtmpdkoYxT’
‘~/tmp/scratch/RtmpdwjdwX’ ‘~/tmp/scratch/Rtmpe2CsLg’
‘~/tmp/scratch/Rtmpe2HpIp’ ‘~/tmp/scratch/RtmpeIMIFv’
‘~/tmp/scratch/RtmpfGAY6r’ ‘~/tmp/scratch/RtmpfOV0MU’
‘~/tmp/scratch/RtmpfiXeO9’ ‘~/tmp/scratch/RtmpgdeizT’
‘~/tmp/scratch/RtmphKP1Gs’ ‘~/tmp/scratch/RtmphQedgP’
‘~/tmp/scratch/RtmphQloqf’ ‘~/tmp/scratch/Rtmpi3TrtV’
‘~/tmp/scratch/RtmpiSAJcO’ ‘~/tmp/scratch/RtmpikNB7S’
‘~/tmp/scratch/RtmpjXItHp’ ‘~/tmp/scratch/Rtmpjfb9Re’
‘~/tmp/scratch/Rtmpjij17K’ ‘~/tmp/scratch/Rtmpk1dSsr’
‘~/tmp/scratch/Rtmpk8GrkX’ ‘~/tmp/scratch/RtmpkV6MYM’
‘~/tmp/scratch/RtmplGzkno’ ‘~/tmp/scratch/RtmpljZKNd’
‘~/tmp/scratch/Rtmplk9jAA’ ‘~/tmp/scratch/Rtmpm7FSu4’
‘~/tmp/scratch/Rtmpm8clBz’ ‘~/tmp/scratch/RtmpmCoSru’
‘~/tmp/scratch/RtmpmJ00GC’ ‘~/tmp/scratch/RtmpmLDv9f’
‘~/tmp/scratch/RtmpmPdlPl’ ‘~/tmp/scratch/RtmpmhTdTC’
‘~/tmp/scratch/Rtmpmz4k7n’ ‘~/tmp/scratch/Rtmpn48N54’
‘~/tmp/scratch/RtmpnHxwTD’ ‘~/tmp/scratch/RtmpoFYUA3’
‘~/tmp/scratch/RtmpotGpKx’ ‘~/tmp/scratch/RtmpozyDb1’
‘~/tmp/scratch/RtmppBj7YM’ ‘~/tmp/scratch/RtmppEeOCY’
‘~/tmp/scratch/RtmppIGLHs’ ‘~/tmp/scratch/RtmppT9S7S’
‘~/tmp/scratch/RtmppzGqp6’ ‘~/tmp/scratch/Rtmpr7inTu’
‘~/tmp/scratch/Rtmprqlkzh’ ‘~/tmp/scratch/RtmprrKPBH’
‘~/tmp/scratch/RtmprrwMdz’ ‘~/tmp/scratch/Rtmps3Zp9E’
‘~/tmp/scratch/Rtmps7l0En’ ‘~/tmp/scratch/RtmpsFApkb’
‘~/tmp/scratch/RtmpsOsvFi’ ‘~/tmp/scratch/RtmpstAfmQ’
‘~/tmp/scratch/RtmptYYtxj’ ‘~/tmp/scratch/RtmpuGL9p2’
‘~/tmp/scratch/RtmpvC1mTE’ ‘~/tmp/scratch/RtmpvG7ydO’
‘~/tmp/scratch/Rtmpvtilag’ ‘~/tmp/scratch/Rtmpw1Fqns’
‘~/tmp/scratch/RtmpwBiGlZ’ ‘~/tmp/scratch/RtmpwOcaY0’
‘~/tmp/scratch/RtmpwRzJd8’ ‘~/tmp/scratch/RtmpwUuzS9’
‘~/tmp/scratch/RtmpwpEH32’ ‘~/tmp/scratch/RtmpxKythJ’
‘~/tmp/scratch/Rtmpxdrxcf’ ‘~/tmp/scratch/RtmpxurAYB’
‘~/tmp/scratch/RtmpxwAvz1’ ‘~/tmp/scratch/RtmpxxOmF2’
‘~/tmp/scratch/Rtmpxy99JE’ ‘~/tmp/scratch/RtmpxzGmg6’
‘~/tmp/scratch/RtmpyWNAw7’ ‘~/tmp/scratch/Rtmpz50gQ0’
‘~/tmp/scratch/RtmpzXXDfD’ ‘~/tmp/scratch/RtmpzeMgc7’
‘~/tmp/scratch/RtmpzjZhUA’ ‘~/tmp/scratch/RtmpzkEBbL’
‘~/tmp/scratch/ccN65l7b.s’ ‘~/tmp/scratch/xvfb-run.0ozTbO’
‘~/tmp/scratch/xvfb-run.1L56Vc’ ‘~/tmp/scratch/xvfb-run.2eYiYu’
‘~/tmp/scratch/xvfb-run.2npXC3’ ‘~/tmp/scratch/xvfb-run.3T6hBW’
‘~/tmp/scratch/xvfb-run.5k5tFu’ ‘~/tmp/scratch/xvfb-run.6iE5hr’
‘~/tmp/scratch/xvfb-run.6oLY4I’ ‘~/tmp/scratch/xvfb-run.88XVR6’
‘~/tmp/scratch/xvfb-run.8RYvYT’ ‘~/tmp/scratch/xvfb-run.95Y7Pq’
‘~/tmp/scratch/xvfb-run.9u9vRW’ ‘~/tmp/scratch/xvfb-run.DDIC8J’
‘~/tmp/scratch/xvfb-run.DOq3zq’ ‘~/tmp/scratch/xvfb-run.E72Dpq’
‘~/tmp/scratch/xvfb-run.FxGW4g’ ‘~/tmp/scratch/xvfb-run.H0lZri’
‘~/tmp/scratch/xvfb-run.Hge0WB’ ‘~/tmp/scratch/xvfb-run.ISCN6t’
‘~/tmp/scratch/xvfb-run.LwMX33’ ‘~/tmp/scratch/xvfb-run.MhqiQS’
‘~/tmp/scratch/xvfb-run.Nc5zbl’ ‘~/tmp/scratch/xvfb-run.OSZaaN’
‘~/tmp/scratch/xvfb-run.OZjuN8’ ‘~/tmp/scratch/xvfb-run.Q9OUT7’
‘~/tmp/scratch/xvfb-run.QP7de3’ ‘~/tmp/scratch/xvfb-run.U4y0Ql’
‘~/tmp/scratch/xvfb-run.Ul8Xjo’ ‘~/tmp/scratch/xvfb-run.V6tB89’
‘~/tmp/scratch/xvfb-run.Ws4Qk9’ ‘~/tmp/scratch/xvfb-run.YSCagr’
‘~/tmp/scratch/xvfb-run.Z9cBps’ ‘~/tmp/scratch/xvfb-run.aRcWrN’
‘~/tmp/scratch/xvfb-run.bEHV3I’ ‘~/tmp/scratch/xvfb-run.bSccNW’
‘~/tmp/scratch/xvfb-run.brL8Sx’ ‘~/tmp/scratch/xvfb-run.dSCKGD’
‘~/tmp/scratch/xvfb-run.escMJy’ ‘~/tmp/scratch/xvfb-run.gPyxjZ’
‘~/tmp/scratch/xvfb-run.jOgJ21’ ‘~/tmp/scratch/xvfb-run.jZ6fWK’
‘~/tmp/scratch/xvfb-run.jzQMoR’ ‘~/tmp/scratch/xvfb-run.kA3i0E’
‘~/tmp/scratch/xvfb-run.kCLF8R’ ‘~/tmp/scratch/xvfb-run.kvW4GU’
‘~/tmp/scratch/xvfb-run.l7EOVF’ ‘~/tmp/scratch/xvfb-run.lPsQbk’
‘~/tmp/scratch/xvfb-run.oOvwFc’ ‘~/tmp/scratch/xvfb-run.pBvOyh’
‘~/tmp/scratch/xvfb-run.pcx2sL’ ‘~/tmp/scratch/xvfb-run.q6VbPw’
‘~/tmp/scratch/xvfb-run.qj3NTP’ ‘~/tmp/scratch/xvfb-run.qzaCMe’
‘~/tmp/scratch/xvfb-run.rJEn4o’ ‘~/tmp/scratch/xvfb-run.sGT1lR’
‘~/tmp/scratch/xvfb-run.stdeiY’ ‘~/tmp/scratch/xvfb-run.ts8XCH’
‘~/tmp/scratch/xvfb-run.u7LzdQ’ ‘~/tmp/scratch/xvfb-run.ulYP3y’
‘~/tmp/scratch/xvfb-run.v1CkmG’ ‘~/tmp/scratch/xvfb-run.vgABqq’
‘~/tmp/scratch/xvfb-run.w4wuNb’ ‘~/tmp/scratch/xvfb-run.wKa2If’
‘~/tmp/scratch/xvfb-run.wlZP6q’ ‘~/tmp/scratch/xvfb-run.xiSL5m’
‘~/tmp/scratch/xvfb-run.y8CmLw’ ‘~/tmp/scratch/xvfb-run.yI3Mg7’
‘~/tmp/scratch/xvfb-run.ySCibZ’ ‘~/tmp/scratch/xvfb-run.yZNKQE’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.9
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘R6’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc