Last updated on 2026-03-22 12:51:00 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.0 | 38.81 | 718.82 | 757.63 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.11.0 | 24.51 | 489.36 | 513.87 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.11.0 | 65.00 | 1131.63 | 1196.63 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.11.0 | 60.00 | 1108.36 | 1168.36 | OK | |
| r-devel-macos-arm64 | 0.11.0 | 8.00 | 120.00 | 128.00 | OK | |
| r-devel-windows-x86_64 | 0.11.0 | 39.00 | 545.00 | 584.00 | OK | |
| r-patched-linux-x86_64 | 0.11.0 | 53.20 | 647.61 | 700.81 | OK | |
| r-release-linux-x86_64 | 0.11.0 | 34.44 | 636.66 | 671.10 | OK | |
| r-release-macos-arm64 | 0.11.0 | 8.00 | 113.00 | 121.00 | OK | |
| r-release-macos-x86_64 | 0.11.0 | 28.00 | 883.00 | 911.00 | OK | |
| r-release-windows-x86_64 | 0.11.0 | 36.00 | 514.00 | 550.00 | OK | |
| r-oldrel-macos-arm64 | 0.11.0 | 8.00 | 109.00 | 117.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.11.0 | 26.00 | 429.00 | 455.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.11.0 | 52.00 | 621.00 | 673.00 | ERROR |
Version: 0.11.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-22 23:02:07.32904: Isomap START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.329308: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.332181: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.338137: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 23:02:07.350693: Isomap START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.350819: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.352941: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.358967: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 23:02:07.365213: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.365361: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.36994: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.38531: embedding
> test_pipeop_isomap.R: 2026-03-22 23:02:07.385852: DONE
> test_pipeop_isomap.R: 2026-03-22 23:02:07.392883: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.39303: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.435833: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.451164: embedding
> test_pipeop_isomap.R: 2026-03-22 23:02:07.451792: DONE
> test_pipeop_isomap.R: 2026-03-22 23:02:07.480561: Isomap START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.480698: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.485582: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.519202: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 23:02:07.528329: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.528531: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.537235: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.617166: embedding
> test_pipeop_isomap.R: 2026-03-22 23:02:07.618319: DONE
> test_pipeop_isomap.R: 2026-03-22 23:02:07.665751: Isomap START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.665897: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.668587: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.674903: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 23:02:07.68299: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.683159: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.687825: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.702594: embedding
> test_pipeop_isomap.R: 2026-03-22 23:02:07.703083: DONE
> test_pipeop_isomap.R: 2026-03-22 23:02:07.734048: Isomap START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.73417: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.736268: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.741611: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 23:02:07.752735: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.752924: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.757416: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.772385: embedding
> test_pipeop_isomap.R: 2026-03-22 23:02:07.772805: DONE
> test_pipeop_isomap.R: 2026-03-22 23:02:07.809002: Isomap START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.809148: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.811767: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.818056: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 23:02:07.831175: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.831382: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.836761: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.852088: embedding
> test_pipeop_isomap.R: 2026-03-22 23:02:07.852491: DONE
> test_pipeop_isomap.R: 2026-03-22 23:02:07.87247: Isomap START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.872634: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.874916: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.881233: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 23:02:07.89476: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.894986: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.899915: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.914871: embedding
> test_pipeop_isomap.R: 2026-03-22 23:02:07.915254: DONE
> test_pipeop_isomap.R: 2026-03-22 23:02:07.948009: Isomap START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.948171: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.950466: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.956535: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 23:02:07.967868: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 23:02:07.968028: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:07.971947: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:07.987347: embedding
> test_pipeop_isomap.R: 2026-03-22 23:02:07.987802: DONE
> test_pipeop_isomap.R: 2026-03-22 23:02:08.009527: Isomap START
> test_pipeop_isomap.R: 2026-03-22 23:02:08.009661: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:08.012091: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:08.018263: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 23:02:08.03687: Isomap START
> test_pipeop_isomap.R: 2026-03-22 23:02:08.036983: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:08.039113: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:08.044799: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 23:02:08.049919: Isomap START
> test_pipeop_isomap.R: 2026-03-22 23:02:08.050012: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 23:02:08.057807: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 23:02:08.064467: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_info.R:3:1', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_subsample.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [257s/207s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-22 04:46:53.644046: Isomap START
> test_pipeop_isomap.R: 2026-03-22 04:46:53.644565: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:53.666708: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:53.696933: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 04:46:53.769753: Isomap START
> test_pipeop_isomap.R: 2026-03-22 04:46:53.770096: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:53.779265: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:53.80444: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 04:46:53.835679: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 04:46:53.836108: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:53.860833: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:53.920166: embedding
> test_pipeop_isomap.R: 2026-03-22 04:46:53.921317: DONE
> test_pipeop_isomap.R: 2026-03-22 04:46:53.950808: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 04:46:53.951111: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:53.972292: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:54.02676: embedding
> test_pipeop_isomap.R: 2026-03-22 04:46:54.027926: DONE
> test_pipeop_isomap.R: 2026-03-22 04:46:54.129352: Isomap START
> test_pipeop_isomap.R: 2026-03-22 04:46:54.129664: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:54.150208: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:54.320243: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 04:46:54.372249: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 04:46:54.372785: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:54.435256: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:54.796577: embedding
> test_pipeop_isomap.R: 2026-03-22 04:46:54.806921: DONE
> test_pipeop_isomap.R: 2026-03-22 04:46:54.999971: Isomap START
> test_pipeop_isomap.R: 2026-03-22 04:46:55.000265: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:55.016391: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:55.042335: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 04:46:55.086459: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 04:46:55.086875: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:55.105392: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:55.177015: embedding
> test_pipeop_isomap.R: 2026-03-22 04:46:55.178158: DONE
> test_pipeop_isomap.R: 2026-03-22 04:46:55.362447: Isomap START
> test_pipeop_isomap.R: 2026-03-22 04:46:55.362737: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:55.376378: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:55.407645: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 04:46:55.479544: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 04:46:55.479971: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:55.514173: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:55.577861: embedding
> test_pipeop_isomap.R: 2026-03-22 04:46:55.579966: DONE
> test_pipeop_isomap.R: 2026-03-22 04:46:55.693857: Isomap START
> test_pipeop_isomap.R: 2026-03-22 04:46:55.694204: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:55.709806: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:55.739923: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 04:46:55.801271: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 04:46:55.801716: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:55.839107: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:55.901703: embedding
> test_pipeop_isomap.R: 2026-03-22 04:46:55.902873: DONE
> test_pipeop_isomap.R: 2026-03-22 04:46:55.982509: Isomap START
> test_pipeop_isomap.R: 2026-03-22 04:46:55.982799: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:55.998654: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:56.028708: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 04:46:56.074455: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 04:46:56.074883: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:56.099172: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:56.159142: embedding
> test_pipeop_isomap.R: 2026-03-22 04:46:56.1603: DONE
> test_pipeop_isomap.R: 2026-03-22 04:46:56.251678: Isomap START
> test_pipeop_isomap.R: 2026-03-22 04:46:56.251968: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:56.258837: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:56.286647: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 04:46:56.341333: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 04:46:56.341781: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:56.372201: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:56.444967: embedding
> test_pipeop_isomap.R: 2026-03-22 04:46:56.44615: DONE
> test_pipeop_isomap.R: 2026-03-22 04:46:56.562068: Isomap START
> test_pipeop_isomap.R: 2026-03-22 04:46:56.562356: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:56.577872: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:56.60961: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 04:46:56.724141: Isomap START
> test_pipeop_isomap.R: 2026-03-22 04:46:56.724454: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:56.736245: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:56.76176: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 04:46:56.798993: Isomap START
> test_pipeop_isomap.R: 2026-03-22 04:46:56.799279: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 04:46:56.813212: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 04:46:56.837846: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_info.R:3:1',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_smote.R:10:3', 'test_pipeop_splines.R:3:1',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'testthat.R' [241s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-21 09:56:44.10454: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:44.10562: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:44.210018: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:44.22703: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:44.29978: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:44.300435: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:44.311312: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:44.333316: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:44.375978: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:44.376878: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:44.399255: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:44.448011: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:44.44988: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:44.492805: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:44.493454: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:44.526098: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:44.572934: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:44.57464: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:44.700595: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:44.701071: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:44.71812: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:44.809124: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:44.854889: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:44.855841: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:44.903367: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:45.167439: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:45.189331: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:45.431342: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:45.431993: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:45.445666: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:45.466393: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:45.517686: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:45.518469: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.013246: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:46.053742: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:46.054882: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:46.255643: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:46.256126: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.263998: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:46.280174: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:46.335375: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:46.336352: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.357125: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:46.407: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:46.408494: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:46.528858: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:46.529568: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.54237: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:46.565152: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:46.643738: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:46.644684: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.667131: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:46.717165: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:46.719278: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:46.84486: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:46.845518: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.857384: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:46.879693: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:46.950984: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:46.951666: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.983112: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:47.035234: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:47.036806: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:47.157409: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:47.158036: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:47.167149: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:47.185801: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:47.256504: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:47.257479: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:47.280021: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:47.330169: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:47.331501: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:47.468806: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:47.469512: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:47.481683: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:47.504757: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:47.637511: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:47.638203: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:47.649583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:47.672321: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:47.710758: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:47.711433: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:47.723261: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:47.746071: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_dictionary.R:7:3',
'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_info.R:3:1', 'test_pipeop_impute.R:4:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_typecheck.R:188:3',
'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64