Last updated on 2026-06-20 09:53:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.3 | 6.10 | 57.59 | 63.69 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.3 | 3.84 | 43.14 | 46.98 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.3 | 9.00 | 99.79 | 108.79 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.3 | 10.00 | 114.42 | 124.42 | WARN | |
| r-devel-windows-x86_64 | 1.0.3 | 10.00 | 96.00 | 106.00 | OK | |
| r-patched-linux-x86_64 | 1.0.3 | 5.78 | 54.64 | 60.42 | OK | |
| r-release-linux-x86_64 | 1.0.2 | 5.33 | 54.68 | 60.01 | ERROR | |
| r-release-macos-arm64 | 1.0.3 | 2.00 | 41.00 | 43.00 | OK | |
| r-release-macos-x86_64 | 1.0.3 | 5.00 | 114.00 | 119.00 | OK | |
| r-release-windows-x86_64 | 1.0.3 | 11.00 | 94.00 | 105.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.3 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.3 | 5.00 | 111.00 | 116.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.3 | 13.00 | 108.00 | 121.00 | OK |
Version: 1.0.3
Check: whether the package can be loaded with stated dependencies
Result: WARN
Error: package or namespace load failed for ‘rcatfish’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘xml2’
Execution halted
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package. All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.3
Check: whether the package can be unloaded cleanly
Result: WARN
Error: package or namespace load failed for ‘rcatfish’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘xml2’
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.3
Check: whether the namespace can be loaded with stated dependencies
Result: WARN
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘xml2’
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.3
Check: whether the namespace can be unloaded cleanly
Result: WARN
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘xml2’
Calls: suppressMessages ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.3
Check: loading without being on the library search path
Result: WARN
Error: package or namespace load failed for ‘rcatfish’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘xml2’
Execution halted
It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("rcatfish")
Loading required package: rcatfish
Welcome to rcatfish: Access to the California Academy of Sciences Eschmeyer's Catalog of Fishes
Catalog of Fishes version of 10 Jun 2026 (Continuously updated since the early 1980s, around the turn of the month.)
If you use this package please cite both:
This R package: Borstein, S.R., Dominy, B.E. & O'Meara, B.C.(2026) rcatifsh: An R interface to the California Academy of Sciences Eschmeyer's Catalog of Fishes. Available at:https://github.com/sborstein/rcatfish.
Catalog of Fishes: Fricke, R., Eschmeyer, W.N. & van der Laan, R. 2026. Catalog of Fishes: Genera, Species, References. Available at: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp. Electronic version accessed 13 06 2026.
Saving _problems/test_rcatfish_updates-9.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 17 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_rcatfish_updates.R:9:7'): Test that rcatfish_updates returns proper definitions ──
Expected `names(updates.hit)` to contain all values in `c(...)`.
Actual: "UpdateDate", "Changes", "AddedGenera", "AddedSpecies"
Expected: "UpdateDate", "Changes", "AuthorshipChanges", "AddedGenera", "AddedSpecies"
Missing: "AuthorshipChanges"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 17 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64