Last updated on 2025-05-19 20:50:02 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.5 | 14.01 | 122.79 | 136.80 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.5 | 10.33 | 88.73 | 99.06 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.5 | 217.16 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.5 | 215.13 | OK | |||
| r-devel-windows-x86_64 | 1.1.5 | 15.00 | 148.00 | 163.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1.5 | 14.06 | 115.35 | 129.41 | OK | |
| r-release-linux-x86_64 | 1.1.5 | 13.12 | 118.01 | 131.13 | OK | |
| r-release-macos-arm64 | 1.1.5 | 106.00 | OK | |||
| r-release-macos-x86_64 | 1.1.5 | 177.00 | OK | |||
| r-release-windows-x86_64 | 1.1.5 | 15.00 | 152.00 | 167.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1.5 | 118.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.5 | 130.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.5 | 19.00 | 172.00 | 191.00 | OK |
Version: 1.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'refseqR.Rmd' using rmarkdown
Quitting from refseqR.Rmd:102-107 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! HTTP failure: 400
+Error%3A+External+viewer+error%3A+Empty+Response.+Bytes+read%3A+0+Status%3A+Unknown
---
Backtrace:
▆
1. └─rentrez::entrez_fetch(db = "nuccore", id = transcript, rettype = "fasta")
2. ├─base::do.call(make_entrez_query, args)
3. └─rentrez (local) `<fn>`(...)
4. └─rentrez:::entrez_check(response)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
HTTP failure: 400
+Error%3A+External+viewer+error%3A+Empty+Response.+Bytes+read%3A+0+Status%3A+Unknown
--- failed re-building 'refseqR.Rmd'
SUMMARY: processing the following file failed:
'refseqR.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'refseqR.Rmd' using rmarkdown
Quitting from refseqR.Rmd:109-111 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `entrez_check()`:
! HTTP failure: 429, too many requests. Functions that contact the NCBI should not be called in parallel. If you are using a shared IP, consider registerring for an API key as described in the rate-limiting section of rentrez tutorial. NCBI message:
{"error":"API rate limit exceeded","api-key":"129.217.207.203","count":"4","limit":"3"}
---
Backtrace:
▆
1. ├─base::substr(toString(refseq_CDSseq(transcript)), 1, 60)
2. ├─base::toString(refseq_CDSseq(transcript))
3. └─refseqR::refseq_CDSseq(transcript)
4. └─refseqR::refseq_CDScoords(transcript)
5. └─rentrez::entrez_fetch(db = "nuccore", id = x, rettype = "gp")
6. ├─base::do.call(make_entrez_query, args)
7. └─rentrez (local) `<fn>`(...)
8. └─rentrez:::entrez_check(response)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
HTTP failure: 429, too many requests. Functions that contact the NCBI should not be called in parallel. If you are using a shared IP, consider registerring for an API key as described in the rate-limiting section of rentrez tutorial. NCBI message:
{"error":"API rate limit exceeded","api-key":"129.217.207.203","count":"4","limit":"3"}
--- failed re-building 'refseqR.Rmd'
SUMMARY: processing the following file failed:
'refseqR.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64