Last updated on 2025-06-17 23:51:19 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 4.68 | 166.91 | 171.59 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 373.72 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 379.15 | OK | |||
| r-release-macos-arm64 | 1.0.0 | 46.00 | ERROR | |||
| r-oldrel-macos-arm64 | 1.0.0 | 299.00 | OK |
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [2s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(scStability)
>
> test_check("scStability")
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 2 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-clustStable.R:2:3'): Clusters were made correctly ──────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'scRNAseq'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-clustStable.R:2:3
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-compareEmb.R:2:3'): All embeddings are compared pairwise ───────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'scRNAseq'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-compareEmb.R:2:3
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-scStability.R:2:3'): Check final embeddings and clusters ───────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'scRNAseq'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-scStability.R:2:3
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 2 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Introduction-to-scStability.Rmd’ using rmarkdown
Quitting from Introduction-to-scStability.Rmd:23-30 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'scRNAseq'
---
Backtrace:
▆
1. └─base::library(scRNAseq)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Introduction-to-scStability.Rmd' failed with diagnostics:
there is no package called 'scRNAseq'
--- failed re-building ‘Introduction-to-scStability.Rmd’
SUMMARY: processing the following file failed:
‘Introduction-to-scStability.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64