Provides a C++ backend for multivariate phylogenetic comparative models implemented in the R-package 'PCMBase'. Can be used in combination with 'PCMBase' to enable fast and parallel likelihood calculation. Implements the pruning likelihood calculation algorithm described in Mitov et al. (2018) <doi:10.48550/arXiv.1809.09014>. Uses the 'SPLITT' C++ library for parallel tree traversal described in Mitov and Stadler (2018) <doi:10.1111/2041-210X.13136>.
| Version: | 0.1.9 |
| Depends: | R (≥ 3.1.0), Rcpp, methods |
| Imports: | PCMBase, data.table, abind |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | testthat, knitr, rmarkdown, covr |
| Published: | 2020-03-23 |
| DOI: | 10.32614/CRAN.package.PCMBaseCpp |
| Author: | Venelin Mitov [aut, cre, cph] (<a href="https://venelin.github.io">venelin.github.io</a>) |
| Maintainer: | Venelin Mitov <vmitov at gmail.com> |
| BugReports: | https://github.com/venelin/PCMBaseCpp/issues |
| License: | GPL (≥ 3.0) |
| URL: | https://github.com/venelin/PCMBaseCpp, https://venelin.github.io |
| NeedsCompilation: | yes |
| Citation: | PCMBaseCpp citation info |
| Materials: | README NEWS |
| CRAN checks: | PCMBaseCpp results [issues need fixing before 2025-04-22] |
| Reference manual: | PCMBaseCpp.pdf |
| Vignettes: |
Getting started (source, R code) |
| Package source: | PCMBaseCpp_0.1.9.tar.gz |
| Windows binaries: | r-devel: PCMBaseCpp_0.1.9.zip, r-release: PCMBaseCpp_0.1.9.zip, r-oldrel: PCMBaseCpp_0.1.9.zip |
| macOS binaries: | r-devel (arm64): PCMBaseCpp_0.1.9.tgz, r-release (arm64): PCMBaseCpp_0.1.9.tgz, r-oldrel (arm64): PCMBaseCpp_0.1.9.tgz, r-devel (x86_64): PCMBaseCpp_0.1.9.tgz, r-release (x86_64): PCMBaseCpp_0.1.9.tgz, r-oldrel (x86_64): PCMBaseCpp_0.1.9.tgz |
| Old sources: | PCMBaseCpp archive |
| Reverse suggests: | mvSLOUCH |
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