# Makefile.in generated by automake 1.18.1 from Makefile.am.
# doc/source/man/Makefile.  Generated from Makefile.in by configure.

# Copyright (C) 1994-2025 Free Software Foundation, Inc.

# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

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# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
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AM_CXXFLAGS = 
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AUTOMAKE = ${SHELL} '/home/ronny/WORK/ViennaRNA/config/missing' automake-1.18
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CC = gcc
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CHECK_LIBS = -lcheck
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CLA_SRCDIR = .
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CONFIG_GSL = #define VRNA_WITH_GSL
CONFIG_LTO = 
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CONFIG_NR_SAMPLING = 
CONFIG_OPENMP = #define VRNA_WITH_OPENMP
CONFIG_SVM = #define VRNA_WITH_SVM
CONFIG_TTY_COLORS = 
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CSCOPE = cscope
CTAGS = ctags
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DLIB_DIR = dlib-20.0
DLIB_VERSION = 20.0
DLLTOOL = false
DOXYGEN_CONF = doxygen.conf
DOXYGEN_DOCDIR = doc/doxygen
DOXYGEN_HAVE_DOT = YES
DOXYGEN_PROJECT_NAME = RNAlib-2.7.2
DOXYGEN_SRCDIR = .
DSYMUTIL = 
DUMPBIN = 
ECHO_C = 
ECHO_N = -n
ECHO_T = 
EGREP = /usr/bin/grep -E
ETAGS = etags
EXEEXT = 
F77 = gfortran
FFLAGS = -g -O2
FGREP = /usr/bin/grep -F
FILECMD = file
FLOAT_PF_FLAG = 
GENGETOPT = /usr/bin/gengetopt
GREP = /usr/bin/grep
GSL_LIBS = -lgsl -lgslcblas
HAVE_CXX17 = 1
HDIUTIL = 
HELP2MAN = /usr/bin/help2man
INSTALL = /usr/bin/install -c
INSTALL_DATA = ${INSTALL} -m 644
INSTALL_PROGRAM = ${INSTALL}
INSTALL_SCRIPT = ${INSTALL}
INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
ISODATE = 2025-12-29
LATEX_CMD = /usr/bin/pdflatex
LD = /usr/bin/ld -m elf_x86_64
LDFLAGS = 
LIBGOMPFLAG = -fopenmp
LIBOBJS = 
LIBS = -lgsl -lgslcblas -lm 
LIBSVM_DIR = libsvm-3.35
LIBTOOL = $(SHELL) $(top_builddir)/libtool
LIBTOOL_DEPS = ./config//ltmain.sh
LIPO = 
LN_S = ln -s
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LTO_CXXFLAGS = 
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LT_SYS_LIBRARY_PATH = 
MACOSX_INSTALLER = 
MAKEINDEX_CMD = /usr/bin/makeindex
MAKEINFO = ${SHELL} '/home/ronny/WORK/ViennaRNA/config/missing' makeinfo
MANIFEST_TOOL = :
MKDIR_P = /usr/bin/mkdir -p
MPFR_LIBS = -lmpfr -lgmp
NAVIEW_DIR = plotting/naview
NM = /usr/bin/nm -B
NMEDIT = 
OBJDUMP = objdump
OBJEXT = o
OMP_LIBS = -lgomp
OPENMP_CFLAGS = -fopenmp
OPENMP_CXXFLAGS = -fopenmp
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OTOOL64 = 
OUR_AR = 
OUR_NM = 
OUR_RANLIB = 
PACKAGE = ViennaRNA
PACKAGE_BUGREPORT = rna@tbi.univie.ac.at
PACKAGE_NAME = ViennaRNA
PACKAGE_STRING = ViennaRNA 2.7.2
PACKAGE_TARNAME = ViennaRNA
PACKAGE_URL = https://www.tbi.univie.ac.at/RNA
PACKAGE_VERSION = 2.7.2
PARAMETER_FILES = misc/dna_mathews1999.par misc/dna_mathews2004.par misc/rna_andronescu2007.par misc/rna_langdon2018.par misc/rna_misc_special_hairpins.par misc/rna_turner1999.par misc/rna_turner2004.par misc/rna_mod_7DA_parameters.json misc/rna_mod_inosine_parameters.json misc/rna_mod_m6A_parameters.json misc/rna_mod_pseudouridine_parameters.json misc/rna_mod_purine_parameters.json misc/rna_mod_dihydrouridine_parameters.json 
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PATH_SEPARATOR = :
PERL = /usr/bin/perl
PERL_ARCH_RELATIVE_INSTALL_DIR = /lib/perl5/5.42/site_perl
PERL_EXT_CPPFLAGS = -D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/include/db5.3
PERL_EXT_INC = /usr/lib/perl5/5.42/core_perl/CORE
PERL_EXT_LDFLAGS = -shared -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-z,pack-relative-relocs -flto=auto -L/usr/lib/db5.3 -fstack-protector-strong
PERL_EXT_LIB = /usr/lib/perl5/5.42/site_perl
PERL_EXT_PREFIX = /usr
PERL_EXT_SITEARCH = /usr/lib/perl5/5.42/site_perl
PERL_EXT_SITELIB = /usr/share/perl5/site_perl
PERL_EXT_SITEPREFIX = /usr
PERL_EXT_VENDORARCH = /usr/lib/perl5/5.42/vendor_perl
PERL_EXT_VENDORLIB = /usr/share/perl5/vendor_perl
PERL_EXT_VENDORPREFIX = /usr
PERL_INTERFACE = Perl
PERL_LIB_RELATIVE_INSTALL_DIR = /share/perl5/site_perl
PERL_SO = .so
PKGBUILD = 
PKGPYEXEC2DIR = 
PKGPYTHON2DIR = 
PKG_CONFIG = /usr/bin/pkg-config
PKG_CONFIG_LIBDIR = 
PKG_CONFIG_PATH = /home/ronny/.local/lib/pkgconfig:
POW_LIB = 
PROBING_DATA_PRIOR_FILES = misc/prior_probing_1M7_paired.data misc/prior_probing_1M7_unpaired.data misc/prior_probing_DMS_paired.data misc/prior_probing_DMS_unpaired.data 
PROBING_DATA_PRIOR_FILES_HEX = misc/prior_probing_1M7_paired.hex misc/prior_probing_1M7_unpaired.hex misc/prior_probing_DMS_paired.hex misc/prior_probing_DMS_unpaired.hex 
PRODUCTBUILD = 
PS_TEMPLATE_FILES = postscript/structure_plot_macro_base.ps postscript/structure_plot_macro_extras.ps postscript/dot_plot_macro_base.ps postscript/dot_plot_macro_turn.ps postscript/dot_plot_macro_sd.ps postscript/dot_plot_macro_ud.ps postscript/dot_plot_macro_sc_motifs.ps postscript/dot_plot_macro_linear_data.ps postscript/aln_macro_base.ps 
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PTHREAD_CC = gcc
PTHREAD_CFLAGS = -pthread
PTHREAD_CXX = g++
PTHREAD_LIBS = -lpthread
PYEXEC2DIR = 
PYTHON2 = 
PYTHON2DIR = 
PYTHON2_DIR = 
PYTHON2_EXECDIR = 
PYTHON2_INC = 
PYTHON2_INTERFACE = 
PYTHON2_LD = 
PYTHON2_LDFLAGS = 
PYTHON2_SO = 
PYTHON3 = /usr/bin/python3
PYTHON3_CACHE_OPT1_EXT = cpython-313.opt-1.pyc
PYTHON3_CACHE_TAG = cpython-313
PYTHON3_DIR = ${prefix}/lib/python3.13/site-packages
PYTHON3_EXECDIR = ${exec_prefix}/lib/python3.13/site-packages
PYTHON3_INC = /usr/include/python3.13
PYTHON3_LD = gcc -shared -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now          -Wl,-z,pack-relative-relocs -flto=auto -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now          -Wl,-z,pack-relative-relocs -flto=auto
PYTHON3_LDFLAGS = 
PYTHON3_SO = .cpython-313-x86_64-linux-gnu.so
PYTHON_INTERFACE = Python
RANLIB = ranlib
REFDOC_PREDEF_FLOAT_PF = 
REFDOC_PREDEF_SVM = VRNA_WITH_SVM
REFERENCE_MANUAL_PDF_NAME = RNAlib-2.7.2.pdf
REFERENCE_MANUAL_TAGFILE = RNAlib-2.7.2.tag
RNA_CFLAGS = -fno-strict-aliasing -fopenmp -ftree-vectorize
RNA_CPPFLAGS = -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_LOG_NO_DEBUG_RNALIB
RNA_CXXFLAGS = -fno-strict-aliasing -fopenmp
RNA_LDFLAGS = -fno-strict-aliasing
SED = /usr/bin/sed
SETUPCFG_GSL_LIBS = gsl_libs  = gsl gslcblas
SETUPCFG_GSL_MACRO = gsl_macro = VRNA_WITH_GSL
SETUPCFG_MPFR_LIBS = mpfr_libs   = mpfr gmp
SETUPCFG_MPFR_MACRO = mpfr_macro  = VRNA_NR_SAMPLING_MPFR
SETUPCFG_NAVIEW_MACRO = naview_macro  = VRNA_WITH_NAVIEW_LAYOUT
SETUPCFG_OPENMP_FLAGS = openmp_cflags = -fopenmp
SETUPCFG_OPENMP_MACRO = openmp_macro  = VRNA_WITH_OPENMP
SETUPCFG_SVM_LIBS = svm_libs  = stdc++
SETUPCFG_SVM_MACRO = svm_macro = VRNA_WITH_SVM
SETUPCFG_SW_GSL = True
SETUPCFG_SW_MPFR = True
SETUPCFG_SW_NAVIEW = True
SETUPCFG_SW_OPENMP = True
SETUPCFG_SW_SIMD = True
SETUPCFG_SW_SVM = True
SET_MAKE = 
SHELL = /bin/sh
SIMD_AVX512_FLAGS = -mavx512f
SIMD_SSE41_FLAGS = -msse4.1
SPHINXBUILD = sphinx-build
SPHINX_CMD_BIBTEX = /usr/bin/bibtex
SPHINX_CMD_LATEX = /usr/bin/pdflatex -interaction=nonstopmode -halt-on-error
SPHINX_CMD_MAKEINDEX = /usr/bin/makeindex
SPHINX_SRCDIR = doc/source
STRIP = strip
SVG_TEMPLATE_FILES = svg/structure_plot_header.svg svg/structure_plot_footer.svg 
SVG_TEMPLATE_FILES_HEX = svg/structure_plot_header.hex svg/structure_plot_footer.hex 
SVM_LIBS = -lstdc++
SVM_VERSION = 3.35
SWIG = /usr/bin/swig
SWIG_LIB = /usr/share/swig/4.4.0 
USER_AR = 
USER_NM = 
USER_RANLIB = 
VERSION = 2.7.2
VRNA_CFLAGS =  -I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_LOG_NO_DEBUG_RNALIB
VRNA_LIBS =  -fno-strict-aliasing -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++
VRNA_VERSION_MAJOR = 2
VRNA_VERSION_MINOR = 7
VRNA_VERSION_PATCH = 2
XXD = /usr/bin/xxd
abs_builddir = /home/ronny/WORK/ViennaRNA/doc/source/man
abs_srcdir = /home/ronny/WORK/ViennaRNA/doc/source/man
abs_top_builddir = /home/ronny/WORK/ViennaRNA
abs_top_srcdir = /home/ronny/WORK/ViennaRNA
ac_ct_AR = ar
ac_ct_CC = gcc
ac_ct_CXX = g++
ac_ct_DUMPBIN = 
ac_ct_F77 = gfortran
am__include = include
am__leading_dot = .
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am__tar = tar --format=ustar -chf - "$$tardir"
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am__v_CXX_0 = @[ -t 1 ] && printf "  \033[01;34mCXX\033[00m      %s\n" $@ || echo "  CXX      $@";
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am__xargs_n = xargs -n
ax_pthread_config = 
bibtex = /usr/bin/bibtex
bindir = ${exec_prefix}/bin
build = x86_64-pc-linux-gnu
build_alias = 
build_cpu = x86_64
build_os = linux-gnu
build_vendor = pc
builddir = .
datadir = ${datarootdir}
datarootdir = ${prefix}/share
docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
dot = /usr/bin/dot
doxygen = /usr/bin/doxygen
dvidir = ${docdir}
exec_prefix = ${prefix}
grep = /usr/bin/grep
host = x86_64-pc-linux-gnu
host_alias = 
host_cpu = x86_64
host_os = linux-gnu
host_vendor = pc
htmldir = ${datarootdir}/doc/${PACKAGE_TARNAME}/html
includedir = ${prefix}/include
infodir = ${datarootdir}/info
install_sh = ${SHELL} /home/ronny/WORK/ViennaRNA/config/install-sh
libdir = ${exec_prefix}/lib
libexecdir = ${exec_prefix}/libexec
localedir = ${datarootdir}/locale
localstatedir = ${prefix}/var
makeindex = /usr/bin/makeindex
mandir = ${datarootdir}/man
mkdir_p = $(MKDIR_P)
oldincludedir = /usr/include
pdfdir = ${docdir}
pdflatex = /usr/bin/pdflatex
perl = /usr/bin/perl
prefix = /usr/local
program_transform_name = s,x,x,
psdir = ${docdir}
py2execdir = 
py3execdir = ${exec_prefix}/lib/python3.13/site-packages
py3execdir_expanded = NONE/lib/python3.13/site-packages
python2dir = 
python3dir = ${prefix}/lib/python3.13/site-packages
python3dir_expanded = NONE/lib/python3.13/site-packages
runstatedir = ${localstatedir}/run
sbindir = ${exec_prefix}/sbin
sharedstatedir = ${prefix}/com
srcdir = .
subdirs =  src/Kinfold src/RNAforester src/Kinwalker src/RNAlocmin src/RNAxplorer
sysconfdir = ${prefix}/etc
target_alias = 
top_build_prefix = ../../../
top_builddir = ../../..
top_srcdir = ../../..
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sphinx_verbose = $(sphinx_verbose_$(V))
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cla_verbose_ = $(cla_verbose_$(AM_DEFAULT_VERBOSITY))
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man2rst_verbose_ = $(man2rst_verbose_$(AM_DEFAULT_VERBOSITY))
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manpages_verbose_ = $(manpages_verbose_$(AM_DEFAULT_VERBOSITY))
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checkmk_verbose_ = $(checkmk_verbose_$(AM_DEFAULT_VERBOSITY))
prepare_verbose = $(prepare_verbose_$(V))
prepare_verbose_ = $(prepare_verbose_$(AM_DEFAULT_VERBOSITY))
pkg_verbose = $(pkg_verbose_$(V))
pkg_verbose_ = $(pkg_verbose_$(AM_DEFAULT_VERBOSITY))
dmg_verbose = $(dmg_verbose_$(V))
dmg_verbose_ = $(dmg_verbose_$(AM_DEFAULT_VERBOSITY))
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ggo_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mGGO\033[0m      %s\n" $@ || echo "  GGO      $@";
#xxd_verbose_0 = @echo "  XXD      $@";
xxd_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mXXD\033[0m      %s\n" $@ || echo "  XXD      $@";
#doxy2swig_verbose_0 = @echo "  DOX2SWIG $@";
doxy2swig_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mDOX2SWIG\033[0m %s\n" $@ || echo "  DOX2SWIG $@";
#sphinx_verbose_0 = @echo -e "  SPHINX    $@";
sphinx_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mSPHINX\033[0m   %s\n" $@ || echo -e "  SPHINX    $@";
#doxygen_verbose_0 = @echo "  DOXYGEN  $@";
doxygen_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mDOXYGEN\033[0m  %s\n" $@ || echo "  DOXYGEN  $@";
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cla_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mCLA\033[0m      %s\n" $@ || echo "  CLA      $@";
#swig_verbose_0 = @echo "  SWIG     $@";
swig_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mSWIG\033[0m     %s\n" $@ || echo "  SWIG     $@";
#man2rst_verbose_0 = @echo "  MAN2RST  $@";
man2rst_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mMAN2RST\033[0m  %s\n" $@ || echo "  MAN2RST  $@";
#manpages_verbose_0 = @echo "  MAN      $@";
manpages_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mMAN\033[0m      %s\n" $@ || echo "  MAN      $@";
#checkmk_verbose_0 = @echo "  CHECKMK  $@";
checkmk_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mCHECKMK\033[0m  %s\n" $@ || echo "  CHECKMK  $@";
#prepare_verbose_0 = @echo "  PREPARE  $@;
prepare_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mPREPARE\033[0m  $@ || echo "  PREPARE  $@;
#pkg_verbose_0 = @echo "  PKG-GEN  $@;
pkg_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mPKG-GEN\033[0m  $@ || echo "  PKG-GEN  $@;
#dmg_verbose_0 = @echo "  DMG-GEN  $@;
dmg_verbose_0 = @[ -t 1 ] && printf "  \033[1;34mDMG-GEN\033[0m  $@ || echo "  DMG-GEN  $@;
REFMAN_MANPAGES = \
    RNA2Dfold.rst \
    RNAaliduplex.rst \
    RNAalifold.rst \
    RNAcofold.rst \
    RNAdistance.rst \
    RNAdos.rst \
    RNAduplex.rst \
    RNAeval.rst \
    RNAfold.rst \
    RNAheat.rst \
    RNAinverse.rst \
    RNALalifold.rst \
    RNALfold.rst \
    RNAmultifold.rst \
    RNApaln.rst \
    RNAparconv.rst \
    RNApdist.rst \
    RNAPKplex.rst \
    RNAplex.rst \
    RNAplfold.rst \
    RNAplot.rst \
    RNApvmin.rst \
    RNAsnoop.rst \
    RNAsubopt.rst \
    RNAup.rst

SUFFIXES = .1 .rst
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	        && { if test -f $@; then exit 0; else break; fi; }; \
	      exit 1;; \
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	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign doc/source/man/Makefile'; \
	$(am__cd) $(top_srcdir) && \
	  $(AUTOMAKE) --foreign doc/source/man/Makefile
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clean: clean-am

clean-am: clean-generic clean-libtool mostlyclean-am

distclean: distclean-am
	-rm -f Makefile
distclean-am: clean-am distclean-generic

dvi: dvi-am

dvi-am:

html: html-am

html-am:

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info-am:

install-data-am:

install-dvi: install-dvi-am

install-dvi-am:

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install-html: install-html-am

install-html-am:

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install-pdf-am:

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.PRECIOUS: Makefile


vpath %.1 = ../../../man

.1.rst:
	$(man2rst_verbose)$(PYTHON3) ../../man2rst.py -i $< -o $@

# remove all generated man pages
maintainer-clean-local:
	-rm -f $(REFMAN_MANPAGES)

# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:

# Tell GNU make to disable its built-in pattern rules.
%:: %,v
%:: RCS/%,v
%:: RCS/%
%:: s.%
%:: SCCS/s.%
