CRAN Package Check Results for Maintainer ‘Edward Burn <edward.burn at ndorms.ox.ac.uk>’

Last updated on 2025-10-21 17:50:21 CEST.

Package NOTE OK
CodelistGenerator 2 11
CohortConstructor 5 8
IncidencePrevalence 13
PhenotypeR 5 8

Package CodelistGenerator

Current CRAN status: NOTE: 2, OK: 11

Version: 3.5.0
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: ageGroupDoc.html:40:1 (ageGroupDoc.Rd:7): Warning: missing </ul> before </div> byConceptDoc.html:41:1 (byConceptDoc.Rd:8): Warning: missing </ul> before </div> bySexDoc.html:40:1 (bySexDoc.Rd:7): Warning: missing </ul> before </div> byYearDoc.html:40:1 (byYearDoc.Rd:7): Warning: missing </ul> before </div> cdmDoc.html:40:1 (cdmDoc.Rd:7): Warning: missing </ul> before </div> countByDoc.html:41:1 (countByDoc.Rd:8): Warning: missing </ul> before </div> domainDoc.html:43:1 (domainDoc.Rd:10): Warning: missing </ul> before </div> doseFormDoc.html:42:1 (doseFormDoc.Rd:9): Warning: missing </ul> before </div> doseUnitDoc.html:42:1 (doseUnitDoc.Rd:9): Warning: missing </ul> before </div> dot-optionsDoc.html:42:1 (dot-optionsDoc.Rd:9): Warning: missing </ul> before </div> groupColumnDoc.html:43:1 (groupColumnDoc.Rd:10): Warning: missing </ul> before </div> groupColumnStrataDoc.html:44:1 (groupColumnStrataDoc.Rd:11): Warning: missing </ul> before </div> headerDoc.html:45:1 (headerDoc.Rd:12): Warning: missing </ul> before </div> headerStrataDoc.html:46:1 (headerStrataDoc.Rd:13): Warning: missing </ul> before </div> hideDoc.html:43:1 (hideDoc.Rd:10): Warning: missing </ul> before </div> hideStrataDoc.html:44:1 (hideStrataDoc.Rd:11): Warning: missing </ul> before </div> includeDescendantsDoc.html:42:1 (includeDescendantsDoc.Rd:9): Warning: missing </ul> before </div> ingredientRangeDoc.html:44:1 (ingredientRangeDoc.Rd:11): Warning: missing </ul> before </div> keepOriginalDoc.html:41:1 (keepOriginalDoc.Rd:8): Warning: missing </ul> before </div> levelATCDoc.html:41:1 (levelATCDoc.Rd:8): Warning: missing </ul> before </div> levelICD10Doc.html:41:1 (levelICD10Doc.Rd:8): Warning: missing </ul> before </div> minimumCountDoc.html:40:1 (minimumCountDoc.Rd:7): Warning: missing </ul> before </div> nameStyleDoc.html:42:1 (nameStyleDoc.Rd:9): Warning: missing </ul> before </div> routeCategoryDoc.html:42:1 (routeCategoryDoc.Rd:9): Warning: missing </ul> before </div> standardConceptDoc.html:42:1 (standardConceptDoc.Rd:9): Warning: missing </ul> before </div> tableDoc.html:40:1 (tableDoc.Rd:7): Warning: missing </ul> before </div> typeBroadDoc.html:41:1 (typeBroadDoc.Rd:8): Warning: missing </ul> before </div> typeNarrowDoc.html:40:1 (typeNarrowDoc.Rd:7): Warning: missing </ul> before </div> typeTableDoc.html:41:1 (typeTableDoc.Rd:8): Warning: missing </ul> before </div> xDoc.html:40:1 (xDoc.Rd:7): Warning: missing </ul> before </div> Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package CohortConstructor

Current CRAN status: NOTE: 5, OK: 8

Version: 0.5.0
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: atFirstDoc.html:43:1 (atFirstDoc.Rd:9): Warning: missing </ul> before </div> benchmarkCohortConstructor.html:74:1 (benchmarkCohortConstructor.Rd:29): Warning: missing </ul> before </div> cdmDoc.html:40:1 (cdmDoc.Rd:7): Warning: missing </ul> before </div> cohortDoc.html:40:1 (cohortDoc.Rd:7): Warning: missing </ul> before </div> cohortIdModifyDoc.html:43:1 (cohortIdModifyDoc.Rd:10): Warning: missing </ul> before </div> cohortIdSubsetDoc.html:42:1 (cohortIdSubsetDoc.Rd:9): Warning: missing </ul> before </div> collapseDoc.html:41:1 (collapseDoc.Rd:8): Warning: missing </ul> before </div> columnDateDoc.html:51:1 (columnDateDoc.Rd:14): Warning: missing </ul> before </div> conceptSetDoc.html:41:1 (conceptSetDoc.Rd:8): Warning: missing </ul> before </div> daysDoc.html:41:1 (daysDoc.Rd:8): Warning: missing </ul> before </div> gapDoc.html:41:1 (gapDoc.Rd:8): Warning: missing </ul> before </div> keepOriginalCohortsDoc.html:41:1 (keepOriginalCohortsDoc.Rd:8): Warning: missing </ul> before </div> nameDoc.html:40:1 (nameDoc.Rd:7): Warning: missing </ul> before </div> padObservationDoc.html:42:1 (padObservationDoc.Rd:9): Warning: missing </ul> before </div> requireDemographicsDoc.html:66:1 (requireDemographicsDoc.Rd:23): Warning: missing </ul> before </div> requireIntersectDoc.html:83:1 (requireIntersectDoc.Rd:33): Warning: missing </ul> before </div> softValidationDoc.html:45:1 (softValidationDoc.Rd:12): Warning: missing </ul> before </div> windowDoc.html:41:1 (windowDoc.Rd:8): Warning: missing </ul> before </div> Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.5.0
Check: installed package size
Result: NOTE installed size is 6.1Mb sub-directories of 1Mb or more: doc 5.1Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package IncidencePrevalence

Current CRAN status: OK: 13

Package PhenotypeR

Current CRAN status: NOTE: 5, OK: 8

Version: 0.2.0
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: cohortDoc.html:40:1 (cohortDoc.Rd:7): Warning: missing </ul> before </div> directoryDoc.html:40:1 (directoryDoc.Rd:7): Warning: missing </ul> before </div> expectationsDoc.html:40:1 (expectationsDoc.Rd:7): Warning: missing </ul> before </div> matchedDoc.html:42:1 (matchedDoc.Rd:9): Warning: missing </ul> before </div> populationSampleDoc.html:51:1 (populationSampleDoc.Rd:16): Warning: missing </ul> before </div> resultDoc.html:40:1 (resultDoc.Rd:7): Warning: missing </ul> before </div> survivalDoc.html:40:1 (survivalDoc.Rd:7): Warning: missing </ul> before </div> Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.0
Check: installed package size
Result: NOTE installed size is 5.2Mb sub-directories of 1Mb or more: doc 4.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64