Last updated on 2025-09-20 18:51:14 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [82s/124s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.549, system: 0.044, elapsed: 1.775 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.066, system: 0.141, elapsed: 11.034 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.016, elapsed: 0.248 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.751, system: 0.202, elapsed: 5.020 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.007, elapsed: 0.232 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.314, system: 0.436, elapsed: 19.211 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.590, system: 0.071, elapsed: 2.110 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.167, system: 0.254, elapsed: 13.995 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.017, elapsed: 0.275 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.837, system: 0.222, elapsed: 8.381 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.005, elapsed: 0.360 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.466, system: 0.598, elapsed: 26.052 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.584, system: 0.051, elapsed: 3.015 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.239, system: 0.249, elapsed: 14.035 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.018, elapsed: 0.309 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.022, system: 0.269, elapsed: 7.425 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.006, elapsed: 0.293 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.153, system: 0.208, elapsed: 1.218 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.004, system: 0.831, elapsed: 27.427 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.513, system: 0.036, elapsed: 2.374 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.167, system: 0.224, elapsed: 14.738 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.019, elapsed: 0.430 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.963, system: 0.305, elapsed: 6.794 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.008, elapsed: 0.292 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.487, system: 0.646, elapsed: 18.367 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.155, system: 1.285, elapsed: 44.145 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/112s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.466, system: 0.040, elapsed: 1.690 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.972, system: 0.138, elapsed: 11.201 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.178, system: 0.013, elapsed: 0.237 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.542, system: 0.208, elapsed: 4.365 seconds]
Computing values for grid cells...
... done. [user: 0.156, system: 0.003, elapsed: 0.168 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.839, system: 0.424, elapsed: 18.289 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.632, system: 0.059, elapsed: 2.205 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.876, system: 0.170, elapsed: 10.811 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.174, system: 0.011, elapsed: 0.189 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.668, system: 0.212, elapsed: 5.367 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.004, elapsed: 0.198 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.024, system: 0.481, elapsed: 19.648 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.574, system: 0.048, elapsed: 1.993 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.945, system: 0.199, elapsed: 12.067 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.012, elapsed: 0.469 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.586, system: 0.205, elapsed: 7.862 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.016, elapsed: 0.297 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.086, system: 0.249, elapsed: 1.144 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.178, system: 0.764, elapsed: 24.889 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.556, system: 0.049, elapsed: 2.287 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.048, system: 0.165, elapsed: 12.334 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.016, elapsed: 0.230 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.796, system: 0.301, elapsed: 6.891 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.010, elapsed: 0.306 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.154, system: 0.561, elapsed: 19.050 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.551, system: 1.139, elapsed: 42.176 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64