Last updated on 2026-02-17 09:50:21 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| HiCociety | 4 | 2 | 8 | |
| metapro | 2 | 12 |
Current CRAN status: ERROR: 4, WARN: 2, OK: 8
Version: 0.1.38
Check: CRAN incoming feasibility
Result: WARN
Maintainer: ‘Sora Yoon <sora.yoon@pennmedicine.upenn.edu>’
Strong dependencies not in the CRAN or BioC software repositories:
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene, org.Mm.eg.db, org.Hs.eg.db
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.39
Check: examples
Result: ERROR
Running examples in ‘HiCociety-Ex.R’ failed
The error most likely occurred in:
> ### Name: add_Genes
> ### Title: Add gene information
> ### Aliases: add_Genes
>
> ### ** Examples
>
> modulefile = system.file('extdata','mouse_naiveCD4T_Vahedi_short.rds',
+ package = 'HiCocietyExample')
> mycom = readRDS(modulefile)
> mycom$ModuleSummary = add_Genes(mycom$ModuleSummary,
+ 'TxDb.Mmusculus.UCSC.mm10.knownGene')
Error in add_Genes(mycom$ModuleSummary, "TxDb.Mmusculus.UCSC.mm10.knownGene") :
Package TxDb.Mmusculus.UCSC.mm10.knownGene not found
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.1.39
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'TxDb.Hsapiens.UCSC.hg38.knownGene',
'TxDb.Mmusculus.UCSC.mm10.knownGene', 'org.Mm.eg.db'
Flavor: r-oldrel-macos-arm64
Version: 0.1.39
Check: installed package size
Result: NOTE
installed size is 6.6Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.1.39
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'TxDb.Hsapiens.UCSC.hg38.knownGene',
'TxDb.Mmusculus.UCSC.mm10.knownGene'
Flavor: r-oldrel-macos-x86_64
Current CRAN status: NOTE: 2, OK: 12
Version: 1.5.11
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Sora Yoon <ysora90@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Sora",
family = "Yoon",
role = c("aut", "cre"),
email = "ysora90@gmail.com")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc