Last updated on 2026-01-20 13:50:33 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [112s/198s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Saving _problems/test-MAPI_GridHexagonal-14.R
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.579, system: 0.042, elapsed: 4.305 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.523, system: 0.080, elapsed: 31.484 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.018, elapsed: 1.353 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.307, system: 0.766, elapsed: 40.383 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.171 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.334, system: 0.931, elapsed: 79.021 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.497, system: 0.033, elapsed: 1.727 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.586, system: 0.100, elapsed: 13.071 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.015, elapsed: 0.905 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.518, system: 0.687, elapsed: 37.769 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.003, elapsed: 0.188 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.517, system: 0.857, elapsed: 54.386 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.633, system: 0.037, elapsed: 2.231 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.557, system: 0.119, elapsed: 12.740 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.015, elapsed: 0.412 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.818, system: 0.944, elapsed: 10.966 seconds]
Computing values for grid cells...
... done. [user: 0.196, system: 0.003, elapsed: 0.167 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.194, system: 0.197, elapsed: 0.871 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 22.379, system: 1.348, elapsed: 28.183 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.676, system: 0.046, elapsed: 1.584 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.056, system: 0.039, elapsed: 9.407 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.344, system: 0.030, elapsed: 0.199 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 9.520, system: 1.028, elapsed: 5.476 seconds]
Computing values for grid cells...
... done. [user: 0.190, system: 0.005, elapsed: 0.185 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 19.834, system: 1.606, elapsed: 11.088 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 41.621, system: 2.814, elapsed: 28.596 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 18 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-MAPI_GridHexagonal.R:14:5'): MAPI_GridHexagonal ────────────────
Error in `MAPI_GridHexagonal(samples4326, crs = 4326, hw = 250000)`: Error: Package 'dggridR' is not installed.
Backtrace:
▆
1. └─mapi::MAPI_GridHexagonal(samples4326, crs = 4326, hw = 250000) at test-MAPI_GridHexagonal.R:14:5
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 18 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘dggridR’
Flavor: r-oldrel-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/250s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.602, system: 0.044, elapsed: 4.457 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.593, system: 0.068, elapsed: 27.735 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.015, elapsed: 0.623 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.422, system: 0.464, elapsed: 13.732 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.005, elapsed: 0.416 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.579, system: 0.620, elapsed: 48.692 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.637, system: 0.042, elapsed: 4.663 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.560, system: 0.066, elapsed: 26.889 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.015, elapsed: 0.657 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.379, system: 0.436, elapsed: 14.165 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.004, elapsed: 0.422 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.512, system: 0.583, elapsed: 48.498 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.562, system: 0.032, elapsed: 3.922 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.618, system: 0.068, elapsed: 31.978 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.015, elapsed: 0.708 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.387, system: 0.424, elapsed: 15.608 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.004, elapsed: 0.672 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.218, system: 0.316, elapsed: 2.653 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.842, system: 0.885, elapsed: 57.690 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.607, system: 0.036, elapsed: 4.750 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.692, system: 0.079, elapsed: 27.249 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.015, elapsed: 0.665 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.323, system: 0.465, elapsed: 13.155 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.006, elapsed: 0.434 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.974, system: 0.616, elapsed: 31.498 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.638, system: 1.242, elapsed: 79.749 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64