Last updated on 2025-11-18 08:50:25 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [84s/149s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.581, system: 0.038, elapsed: 2.551 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.471, system: 0.093, elapsed: 14.321 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.013, elapsed: 0.297 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.884, system: 0.189, elapsed: 5.750 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.004, elapsed: 0.231 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.869, system: 0.360, elapsed: 24.024 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.514, system: 0.030, elapsed: 2.361 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.476, system: 0.104, elapsed: 15.954 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.205, system: 0.013, elapsed: 0.344 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.139, system: 0.192, elapsed: 7.376 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.005, elapsed: 0.286 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.071, system: 0.371, elapsed: 27.224 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.575, system: 0.040, elapsed: 2.429 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.623, system: 0.089, elapsed: 15.876 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.012, elapsed: 0.346 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.956, system: 0.196, elapsed: 6.321 seconds]
Computing values for grid cells...
... done. [user: 0.187, system: 0.018, elapsed: 0.315 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.221, system: 0.255, elapsed: 1.374 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.407, system: 0.639, elapsed: 27.774 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.518, system: 0.030, elapsed: 2.616 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.493, system: 0.081, elapsed: 20.423 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.013, elapsed: 0.590 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.896, system: 0.180, elapsed: 10.414 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.003, elapsed: 0.454 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.796, system: 0.488, elapsed: 24.748 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.746, system: 0.814, elapsed: 60.775 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/144s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.833, system: 0.090, elapsed: 2.752 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.805, system: 0.263, elapsed: 16.260 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.018, elapsed: 0.337 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.878, system: 0.266, elapsed: 5.887 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.013, elapsed: 0.234 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.471, system: 0.694, elapsed: 26.326 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.837, system: 0.102, elapsed: 2.382 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.842, system: 0.347, elapsed: 15.121 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.020, elapsed: 0.374 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.996, system: 0.227, elapsed: 8.006 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.004, elapsed: 0.266 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.601, system: 0.743, elapsed: 27.007 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.606, system: 0.039, elapsed: 2.573 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.600, system: 0.104, elapsed: 15.363 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.012, elapsed: 0.393 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.786, system: 0.173, elapsed: 7.816 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.004, elapsed: 0.342 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.129, system: 0.262, elapsed: 1.425 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.151, system: 0.620, elapsed: 29.156 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.569, system: 0.030, elapsed: 2.619 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.549, system: 0.068, elapsed: 17.423 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.013, elapsed: 0.345 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.778, system: 0.177, elapsed: 7.588 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.004, elapsed: 0.375 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.696, system: 0.480, elapsed: 23.151 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.620, system: 0.798, elapsed: 52.755 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64