Last updated on 2025-07-19 08:49:27 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/127s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.509, system: 0.044, elapsed: 2.008 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.942, system: 0.120, elapsed: 11.745 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.014, elapsed: 0.269 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.756, system: 0.204, elapsed: 4.934 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.004, elapsed: 0.220 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.081, system: 0.413, elapsed: 20.037 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.541, system: 0.047, elapsed: 2.292 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.992, system: 0.092, elapsed: 12.844 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.013, elapsed: 0.262 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.767, system: 0.168, elapsed: 6.488 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.003, elapsed: 0.247 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.191, system: 0.346, elapsed: 22.944 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.554, system: 0.032, elapsed: 2.628 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.973, system: 0.081, elapsed: 15.045 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.011, elapsed: 0.258 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.780, system: 0.190, elapsed: 8.265 seconds]
Computing values for grid cells...
... done. [user: 0.158, system: 0.003, elapsed: 0.447 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.139, system: 0.222, elapsed: 1.908 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.420, system: 0.560, elapsed: 29.737 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.465, system: 0.031, elapsed: 3.985 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.013, system: 0.066, elapsed: 20.154 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.012, elapsed: 0.326 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.784, system: 0.176, elapsed: 6.684 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.004, elapsed: 0.279 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.140, system: 0.439, elapsed: 14.000 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.403, system: 0.758, elapsed: 46.896 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [77s/105s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.501, system: 0.042, elapsed: 1.643 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.937, system: 0.090, elapsed: 10.989 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.013, elapsed: 0.212 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.461, system: 0.175, elapsed: 3.783 seconds]
Computing values for grid cells...
... done. [user: 0.146, system: 0.002, elapsed: 0.148 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.737, system: 0.338, elapsed: 17.352 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.356, system: 0.024, elapsed: 1.456 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.996, system: 0.066, elapsed: 14.037 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.010, elapsed: 0.292 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.613, system: 0.158, elapsed: 6.155 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.005, elapsed: 0.375 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.849, system: 0.285, elapsed: 23.062 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.577, system: 0.035, elapsed: 2.977 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.992, system: 0.065, elapsed: 14.784 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.010, elapsed: 0.206 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.459, system: 0.164, elapsed: 5.327 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.262 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.061, system: 0.219, elapsed: 0.940 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.057, system: 0.533, elapsed: 25.633 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.464, system: 0.027, elapsed: 2.196 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.920, system: 0.053, elapsed: 13.087 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.179, system: 0.010, elapsed: 0.274 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.447, system: 0.156, elapsed: 5.044 seconds]
Computing values for grid cells...
... done. [user: 0.156, system: 0.007, elapsed: 0.213 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 9.870, system: 0.523, elapsed: 11.909 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 24.679, system: 0.802, elapsed: 33.636 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64