AdmixPoly: Global and Local Admixture Inference in Polyploids

Provides functions to perform global (genome-wide) and local admixture inference from bi- and multi-allelic marker dosages (discrete or continuous) in polyploid species.

Version: 1.0.0
Depends: R (≥ 3.6.0)
Imports: Rcpp, purrr, utils, dplyr (≥ 1.1.0), tidyr, tibble, ggplot2, magrittr, Matrix, data.table
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown
Published: 2026-06-08
DOI: 10.32614/CRAN.package.AdmixPoly (may not be active yet)
Author: Simon Rio ORCID iD [aut, cre], Tristan Mary-Huard ORCID iD [aut], Franck Gauthier ORCID iD [aut]
Maintainer: Simon Rio <simon.rio at cirad.fr>
License: GPL (≥ 3)
NeedsCompilation: yes
SystemRequirements: A system with a C++ compiler supporting OpenMP
Language: en-US
Materials: README
CRAN checks: AdmixPoly results [issues need fixing before 2026-06-23]

Documentation:

Reference manual: AdmixPoly.html , AdmixPoly.pdf
Vignettes: AdmixPoly-vignette (source, R code)

Downloads:

Package source: AdmixPoly_1.0.0.tar.gz
Windows binaries: r-devel: not available, r-release: AdmixPoly_1.0.0.zip, r-oldrel: not available
macOS binaries: r-release (arm64): AdmixPoly_1.0.0.tgz, r-oldrel (arm64): AdmixPoly_1.0.0.tgz, r-release (x86_64): AdmixPoly_1.0.0.tgz, r-oldrel (x86_64): AdmixPoly_1.0.0.tgz

Linking:

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