CRAN Package Check Results for Maintainer ‘Thomas Lumley <t.lumley at auckland.ac.nz>’

Last updated on 2026-01-22 20:49:28 CET.

Package NOTE OK
biglm 5 8
bigQF 13
DHBins 2 11
hextri 2 11
leaps 2 11
mitools 13
rimu 13
rmeta 2 11
survey 7 6
svylme 2 11
svyVGAM 13
xkcdcolors 2 11

Package biglm

Current CRAN status: NOTE: 5, OK: 8

Version: 0.9-3
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.9-3
Check: R code for possible problems
Result: NOTE Found the following calls to data() loading into the global environment: File ‘biglm/R/bigglm.R’: data(reset = TRUE) data(reset = FALSE) See section ‘Good practice’ in ‘?data’. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Package bigQF

Current CRAN status: NOTE: 13

Version: 1.6
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.6
Check: Rd files
Result: NOTE checkRd: (-1) pQF.Rd:30: Lost braces; missing escapes or markup? 30 | When \code{M} is not square, a randomised estimator for the trace of \code{crossprod(M)^2} is used. This is the sample size. When \code{M} is of \code{"matrixfree"} and does not include the trace of {crossprod(M)} as a component, this sample size will also be used to compute that. See Hutchinson reference. } | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package DHBins

Current CRAN status: NOTE: 2, OK: 11

Version: 1.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz") as necessary. The Description field contains or Regional Councils. The preprint Lumley (2019) <arXiv:1912.04435> is Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package hextri

Current CRAN status: NOTE: 2, OK: 11

Version: 0.9.17
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz", comment = "Jie Fu Yu made a prototype") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package leaps

Current CRAN status: NOTE: 2, OK: 11

Version: 3.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = c("Thomas", "Lumley", "based", "on", "Fortran", "code", "by", "Alan"), family = "Miller", role = "aut"), person(given = "Thomas", family = "Lumley", role = "cre", email = "t.lumley@auckland.ac.nz")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package mitools

Current CRAN status: NOTE: 13

Version: 2.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.4
Check: Rd files
Result: NOTE checkRd: (-1) PV.Rd:14: Lost braces 14 | plausible value in turn; with code{rewrite=FALSE} a new data set is | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package rimu

Current CRAN status: OK: 13

Package rmeta

Current CRAN status: NOTE: 2, OK: 11

Version: 3.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package survey

Current CRAN status: NOTE: 7, OK: 6

Version: 4.4-8
Check: tests
Result: NOTE Running ‘3stage2phase.R’ [3s/5s] Running ‘DBIcheck.R’ [3s/4s] Running ‘anova-svycoxph.R’ [3s/5s] Running ‘api.R’ [3s/4s] Running ‘badcal.R’ [2s/3s] Comparing ‘badcal.Rout’ to ‘badcal.Rout.save’ ... OK Running ‘brewer_cpp.R’ [2s/3s] Running ‘bycovmat.R’ [2s/3s] Running ‘caleg.R’ [4s/6s] Running ‘check.R’ [2s/4s] Comparing ‘check.Rout’ to ‘check.Rout.save’ ... OK Running ‘confintrep.R’ [2s/3s] Running ‘contrast-replicates.R’ [2s/3s] Running ‘coxph-termtest.R’ [2s/4s] Running ‘deff.R’ [2s/4s] Comparing ‘deff.Rout’ to ‘deff.Rout.save’ ... OK Running ‘defftest.R’ [2s/3s] Running ‘degf-svrepdesign.R’ [2s/3s] Running ‘domain.R’ [3s/4s] Comparing ‘domain.Rout’ to ‘domain.Rout.save’ ... OK Running ‘fpc.R’ [2s/4s] Running ‘glm-scoping.R’ [2s/3s] Running ‘kalton.R’ [2s/3s] Comparing ‘kalton.Rout’ to ‘kalton.Rout.save’ ... OK Running ‘logranktest.R’ [2s/4s] Running ‘lonely.psu.R’ [3s/4s] Comparing ‘lonely.psu.Rout’ to ‘lonely.psu.Rout.save’ ... OK Running ‘mtcars-var.R’ [2s/3s] Running ‘multistage-rcpp.R’ [3s/3s] Running ‘multistage.R’ [2s/3s] Running ‘na_action.R’ [2s/3s] Running ‘newquantile.R’ [2s/3s] Running ‘nwts-cch.R’ [3s/5s] Running ‘nwts.R’ [4s/5s] Comparing ‘nwts.Rout’ to ‘nwts.Rout.save’ ... OK Running ‘poisson.R’ [2s/3s] Running ‘pps.R’ [3s/4s] Running ‘qrule-swiss.R’ [2s/3s] Running ‘quantile.R’ [3s/4s] Comparing ‘quantile.Rout’ to ‘quantile.Rout.save’ ... OK Running ‘quantiles-chile.R’ [2s/3s] Running ‘rakecheck.R’ [3s/4s] Comparing ‘rakecheck.Rout’ to ‘rakecheck.Rout.save’ ...48c48 < NAs :11 NAs :4 NAs :2 NAs :13 NAs :2 NAs :4 --- > NA's :11 NA's :4 NA's :2 NA's :13 NA's :2 NA's :4 56c56 < NAs :4 NAs :16 NAs :9 NAs :34 NAs :21 --- > NA's :4 NA's :16 NA's :9 NA's :34 NA's :21 64c64 < NAs :37 NAs :13 NAs :1 NAs :12 --- > NA's :37 NA's :13 NA's :1 NA's :12 Running ‘raowuboot.R’ [2s/3s] Comparing ‘raowuboot.Rout’ to ‘raowuboot.Rout.save’ ... OK Running ‘regTermTest-missing.R’ [2s/3s] Running ‘regpredict.R’ [2s/3s] Comparing ‘regpredict.Rout’ to ‘regpredict.Rout.save’ ... OK Running ‘rss_scores.R’ [2s/3s] Running ‘scoping.R’ [2s/3s] Running ‘survcurve.R’ [6s/9s] Comparing ‘survcurve.Rout’ to ‘survcurve.Rout.save’ ... OK Running ‘svyby-strings.R’ [2s/3s] Running ‘svyby_bug.R’ [3s/3s] Running ‘svyby_se.R’ [2s/3s] Running ‘svycontrast.R’ [2s/3s] Running ‘svyivreg-var.R’ [3s/3s] Running ‘svyivreg.R’ [2s/3s] Running ‘svyolr-rake-subset.R’ [3s/4s] Running ‘svyolr.R’ [3s/3s] Running ‘toy_example_for_postStratify.R’ [2s/3s] Running ‘twophase.R’ [4s/5s] Comparing ‘twophase.Rout’ to ‘twophase.Rout.save’ ... OK Flavor: r-devel-linux-x86_64-debian-clang

Version: 4.4-8
Check: tests
Result: NOTE Running ‘3stage2phase.R’ [2s/3s] Running ‘DBIcheck.R’ [2s/3s] Running ‘anova-svycoxph.R’ [2s/3s] Running ‘api.R’ [2s/2s] Running ‘badcal.R’ [2s/2s] Comparing ‘badcal.Rout’ to ‘badcal.Rout.save’ ... OK Running ‘brewer_cpp.R’ [2s/2s] Running ‘bycovmat.R’ [2s/2s] Running ‘caleg.R’ [3s/3s] Running ‘check.R’ [2s/2s] Comparing ‘check.Rout’ to ‘check.Rout.save’ ... OK Running ‘confintrep.R’ [2s/2s] Running ‘contrast-replicates.R’ [2s/2s] Running ‘coxph-termtest.R’ [2s/2s] Running ‘deff.R’ [2s/2s] Comparing ‘deff.Rout’ to ‘deff.Rout.save’ ... OK Running ‘defftest.R’ [2s/2s] Running ‘degf-svrepdesign.R’ [2s/2s] Running ‘domain.R’ [2s/2s] Comparing ‘domain.Rout’ to ‘domain.Rout.save’ ... OK Running ‘fpc.R’ [2s/2s] Running ‘glm-scoping.R’ [2s/2s] Running ‘kalton.R’ [2s/2s] Comparing ‘kalton.Rout’ to ‘kalton.Rout.save’ ... OK Running ‘logranktest.R’ [2s/2s] Running ‘lonely.psu.R’ [2s/2s] Comparing ‘lonely.psu.Rout’ to ‘lonely.psu.Rout.save’ ... OK Running ‘mtcars-var.R’ [2s/2s] Running ‘multistage-rcpp.R’ [2s/2s] Running ‘multistage.R’ [2s/2s] Running ‘na_action.R’ [2s/2s] Running ‘newquantile.R’ [2s/2s] Running ‘nwts-cch.R’ [3s/4s] Running ‘nwts.R’ [3s/4s] Comparing ‘nwts.Rout’ to ‘nwts.Rout.save’ ... OK Running ‘poisson.R’ [2s/2s] Running ‘pps.R’ [2s/3s] Running ‘qrule-swiss.R’ [2s/2s] Running ‘quantile.R’ [3s/3s] Comparing ‘quantile.Rout’ to ‘quantile.Rout.save’ ... OK Running ‘quantiles-chile.R’ [2s/2s] Running ‘rakecheck.R’ [2s/3s] Comparing ‘rakecheck.Rout’ to ‘rakecheck.Rout.save’ ...48c48 < NAs :11 NAs :4 NAs :2 NAs :13 NAs :2 NAs :4 --- > NA's :11 NA's :4 NA's :2 NA's :13 NA's :2 NA's :4 56c56 < NAs :4 NAs :16 NAs :9 NAs :34 NAs :21 --- > NA's :4 NA's :16 NA's :9 NA's :34 NA's :21 64c64 < NAs :37 NAs :13 NAs :1 NAs :12 --- > NA's :37 NA's :13 NA's :1 NA's :12 Running ‘raowuboot.R’ [2s/2s] Comparing ‘raowuboot.Rout’ to ‘raowuboot.Rout.save’ ... OK Running ‘regTermTest-missing.R’ [2s/3s] Running ‘regpredict.R’ [2s/2s] Comparing ‘regpredict.Rout’ to ‘regpredict.Rout.save’ ... OK Running ‘rss_scores.R’ [2s/3s] Running ‘scoping.R’ [2s/2s] Running ‘survcurve.R’ [5s/6s] Comparing ‘survcurve.Rout’ to ‘survcurve.Rout.save’ ... OK Running ‘svyby-strings.R’ [2s/2s] Running ‘svyby_bug.R’ [2s/2s] Running ‘svyby_se.R’ [2s/2s] Running ‘svycontrast.R’ [2s/2s] Running ‘svyivreg-var.R’ [2s/2s] Running ‘svyivreg.R’ [2s/2s] Running ‘svyolr-rake-subset.R’ [2s/2s] Running ‘svyolr.R’ [2s/2s] Running ‘toy_example_for_postStratify.R’ [2s/2s] Running ‘twophase.R’ [3s/3s] Comparing ‘twophase.Rout’ to ‘twophase.Rout.save’ ... OK Flavor: r-devel-linux-x86_64-debian-gcc

Version: 4.4-8
Check: tests
Result: NOTE Running ‘3stage2phase.R’ Running ‘DBIcheck.R’ Running ‘anova-svycoxph.R’ Running ‘api.R’ Running ‘badcal.R’ Comparing ‘badcal.Rout’ to ‘badcal.Rout.save’ ... OK Running ‘brewer_cpp.R’ Running ‘bycovmat.R’ Running ‘caleg.R’ Running ‘check.R’ Comparing ‘check.Rout’ to ‘check.Rout.save’ ... OK Running ‘confintrep.R’ Running ‘contrast-replicates.R’ Running ‘coxph-termtest.R’ Running ‘deff.R’ Comparing ‘deff.Rout’ to ‘deff.Rout.save’ ... OK Running ‘defftest.R’ Running ‘degf-svrepdesign.R’ Running ‘domain.R’ Comparing ‘domain.Rout’ to ‘domain.Rout.save’ ... OK Running ‘fpc.R’ Running ‘glm-scoping.R’ Running ‘kalton.R’ Comparing ‘kalton.Rout’ to ‘kalton.Rout.save’ ... OK Running ‘logranktest.R’ Running ‘lonely.psu.R’ Comparing ‘lonely.psu.Rout’ to ‘lonely.psu.Rout.save’ ... OK Running ‘mtcars-var.R’ Running ‘multistage-rcpp.R’ Running ‘multistage.R’ Running ‘na_action.R’ Running ‘newquantile.R’ Running ‘nwts-cch.R’ Running ‘nwts.R’ Comparing ‘nwts.Rout’ to ‘nwts.Rout.save’ ... OK Running ‘poisson.R’ Running ‘pps.R’ Running ‘qrule-swiss.R’ Running ‘quantile.R’ Comparing ‘quantile.Rout’ to ‘quantile.Rout.save’ ... OK Running ‘quantiles-chile.R’ Running ‘rakecheck.R’ Comparing ‘rakecheck.Rout’ to ‘rakecheck.Rout.save’ ...48c48 < NAs :11 NAs :4 NAs :2 NAs :13 NAs :2 NAs :4 --- > NA's :11 NA's :4 NA's :2 NA's :13 NA's :2 NA's :4 56c56 < NAs :4 NAs :16 NAs :9 NAs :34 NAs :21 --- > NA's :4 NA's :16 NA's :9 NA's :34 NA's :21 64c64 < NAs :37 NAs :13 NAs :1 NAs :12 --- > NA's :37 NA's :13 NA's :1 NA's :12 Running ‘raowuboot.R’ Comparing ‘raowuboot.Rout’ to ‘raowuboot.Rout.save’ ... OK Running ‘regTermTest-missing.R’ Running ‘regpredict.R’ Comparing ‘regpredict.Rout’ to ‘regpredict.Rout.save’ ... OK Running ‘rss_scores.R’ Running ‘scoping.R’ Running ‘survcurve.R’ Comparing ‘survcurve.Rout’ to ‘survcurve.Rout.save’ ... OK Running ‘svyby-strings.R’ Running ‘svyby_bug.R’ Running ‘svyby_se.R’ Running ‘svycontrast.R’ Running ‘svyivreg-var.R’ Running ‘svyivreg.R’ Running ‘svyolr-rake-subset.R’ Running ‘svyolr.R’ Running ‘toy_example_for_postStratify.R’ Running ‘twophase.R’ Comparing ‘twophase.Rout’ to ‘twophase.Rout.save’ ... OK Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 4.4-8
Check: tests
Result: NOTE Running '3stage2phase.R' [3s] Running 'DBIcheck.R' [3s] Running 'anova-svycoxph.R' [3s] Running 'api.R' [2s] Running 'badcal.R' [2s] Comparing 'badcal.Rout' to 'badcal.Rout.save' ... OK Running 'brewer_cpp.R' [2s] Running 'bycovmat.R' [2s] Running 'caleg.R' [3s] Running 'check.R' [2s] Comparing 'check.Rout' to 'check.Rout.save' ... OK Running 'confintrep.R' [2s] Running 'contrast-replicates.R' [2s] Running 'coxph-termtest.R' [2s] Running 'deff.R' [2s] Comparing 'deff.Rout' to 'deff.Rout.save' ... OK Running 'defftest.R' [2s] Running 'degf-svrepdesign.R' [2s] Running 'domain.R' [2s] Comparing 'domain.Rout' to 'domain.Rout.save' ... OK Running 'fpc.R' [2s] Running 'glm-scoping.R' [2s] Running 'kalton.R' [2s] Comparing 'kalton.Rout' to 'kalton.Rout.save' ... OK Running 'logranktest.R' [2s] Running 'lonely.psu.R' [2s] Comparing 'lonely.psu.Rout' to 'lonely.psu.Rout.save' ... OK Running 'mtcars-var.R' [2s] Running 'multistage-rcpp.R' [2s] Running 'multistage.R' [2s] Running 'na_action.R' [2s] Running 'newquantile.R' [2s] Running 'nwts-cch.R' [3s] Running 'nwts.R' [4s] Comparing 'nwts.Rout' to 'nwts.Rout.save' ... OK Running 'poisson.R' [2s] Running 'pps.R' [2s] Running 'qrule-swiss.R' [2s] Running 'quantile.R' [3s] Comparing 'quantile.Rout' to 'quantile.Rout.save' ... OK Running 'quantiles-chile.R' [2s] Running 'rakecheck.R' [2s] Comparing 'rakecheck.Rout' to 'rakecheck.Rout.save' ...48c48 < NAs :11 NAs :4 NAs :2 NAs :13 NAs :2 NAs :4 --- > NA's :11 NA's :4 NA's :2 NA's :13 NA's :2 NA's :4 56c56 < NAs :4 NAs :16 NAs :9 NAs :34 NAs :21 --- > NA's :4 NA's :16 NA's :9 NA's :34 NA's :21 64c64 < NAs :37 NAs :13 NAs :1 NAs :12 --- > NA's :37 NA's :13 NA's :1 NA's :12 Running 'raowuboot.R' [2s] Comparing 'raowuboot.Rout' to 'raowuboot.Rout.save' ... OK Running 'regTermTest-missing.R' [2s] Running 'regpredict.R' [2s] Comparing 'regpredict.Rout' to 'regpredict.Rout.save' ... OK Running 'rss_scores.R' [2s] Running 'scoping.R' [2s] Running 'survcurve.R' [5s] Comparing 'survcurve.Rout' to 'survcurve.Rout.save' ... OK Running 'svyby-strings.R' [2s] Running 'svyby_bug.R' [2s] Running 'svyby_se.R' [2s] Running 'svycontrast.R' [2s] Running 'svyivreg-var.R' [2s] Running 'svyivreg.R' [2s] Running 'svyolr-rake-subset.R' [2s] Running 'svyolr.R' [2s] Running 'toy_example_for_postStratify.R' [2s] Running 'twophase.R' [3s] Comparing 'twophase.Rout' to 'twophase.Rout.save' ... OK Flavor: r-devel-windows-x86_64

Version: 4.4-8
Check: installed package size
Result: NOTE installed size is 6.9Mb sub-directories of 1Mb or more: R 2.0Mb doc 1.5Mb libs 2.0Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package svylme

Current CRAN status: NOTE: 2, OK: 11

Version: 1.5-1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ The Description field contains likelihood, as described in Lumley & Huang (2023) <arXiv:2311.13048>. Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package svyVGAM

Current CRAN status: OK: 13

Package xkcdcolors

Current CRAN status: NOTE: 2, OK: 11

Version: 1.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz"), person(given = c("using", "data", "from", "Randall"), family = "Munroe", role = "aut"), person(given = c("about", "2.2e5", "survey"), family = "participants", role = "aut")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc